Software Open Access

PeaKO: MEME Suite CentriMo patch and binary

Bailey, Timothy L.; Machanick, Philip; Johnson, James; Grant, Charles E.; Viner, Coby; Denisko, Danielle; Hoffman, Michael M.

  1. patch_5.0.5_peaKO.txt: Patch file, against MEME Suite version 5.0.5, for our changes to centrimo.c
  2. revised_CentriMo_test_files.tar.gz: tarball, containing all revised CentriMo test files that differ after this patch (only those with differences are included, within the same directory structure as in the distribution)
  3. centrimo: CentriMo binary (i386:x86-64) that we used to generate our published results
All contents of the upload are licensed under the same terms as the MEME Suite itself: MEME Suite Authors: Timothy L. Bailey, William Noble Copyright (c) 1994-2015 The Regents of the University of California. All Rights Reserved. Permission to use, copy, modify, and distribute any part of this software for educational, research and non-profit purposes, without fee, and without a written agreement is hereby granted, provided that the above copyright notice, this paragraph and the following three paragraphs appear in all copies. Those desiring to incorporate this software into commercial products or use for commercial purposes should contact the Technology Transfer Office, University of California, San Diego, 9500 Gilman Drive, La Jolla, California, 92093-0910, Phone: (858) 534-5815. IN NO EVENT SHALL THE UNIVERSITY OF CALIFORNIA BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF THIS SOFTWARE, EVEN IF THE UNIVERSITY OF CALIFORNIA HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. THE SOFTWARE PROVIDED HEREUNDER IS ON AN "AS IS" BASIS, AND THE UNIVERSITY OF CALIFORNIA HAS NO OBLIGATIONS TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS. THE UNIVERSITY OF CALIFORNIA MAKES NO REPRESENTATIONS AND EXTENDS NO WARRANTIES OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE, OR THAT THE USE OF THE MATERIAL WILL NOT INFRINGE ANY PATENT, TRADEMARK OR OTHER RIGHTS.
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