10.5281/zenodo.3346782
https://zenodo.org/records/3346782
oai:zenodo.org:3346782
Agosti, Donat
Donat
Agosti
0000-0001-9286-1200
Plazi, Bern, Switzerland
Nielsen, Lars Holm
Lars Holm
Nielsen
0000-0001-8135-3489
Zenodo, Cern, Meyrin, Switzerland
Dillen, Mathias
Mathias
Dillen
0000-0002-3973-1252
Meise Botanical Garden, Meise, Belgium
Groom, Quentin
Quentin
Groom
0000-0002-0596-5376
Meise Botanical Garden, Meise, Belgium
Digitisation infrastructure design for Zenodo. Deliverable D6.3
ICEDIG
2019
biodiversity
repository
FAIR data
ICEDIG
DiSSCo
infrastructure
digitization
Zenodo
2019-07-28
eng
10.7287/peerj.preprints.27666v1
10.3897/BDJ.7.e31817
10.3897/rio.3.e12502
10.5281/zenodo.3340591
10.5281/zenodo.3340635
10.5281/zenodo.162241
10.1111/2041-210X.13075
10.1093/biosci/biy163
10.1371/journal.pone.0029715
https://doi.org/10.1038%2Fsdata.2016.18
https://zenodo.org/communities/icedigtest/?page=1&size=20
https://zenodo.org/communities/belgiumherbarium/search?page=1&size=20
10.5281/zenodo.3346781
https://zenodo.org/communities/icedig
https://zenodo.org/communities/biosyslit
https://zenodo.org/communities/eu
Creative Commons Attribution 4.0 International
This deliverable specifies the requirements for adapting CERN’s Zenodo services for long-term storage of large-scale digitised biodiversity data. The report describes the service(s) features, capacities, functions and its suitability. Recommendations of use and possible designs are also included. The report is structured in eight parts:
The context section describes the setting of the pilot, including the institutions involved (sources and services providers) and the actors within those institutions, the processes covered, and services provided.
The infrastructure section depicts the facilities supporting the integration of service providers and consumers, particularly APIs, programming languages, protocols, and speeds.
The data section provides an overview of the data model used for storing digital specimen data requiring long-term preservation, including the minimal data required for making a deposit, as well as data and metadata, which are part of each digital specimen.
The design section describes the overall architectural view of the implemented solution.
The test case section describes the upload of two data sets, a 2K of herbarium sheets with rich metadata and large digital files and a 281K of herbarium sheets with limited metadata.
The recommendation section provides practical recommendations to use the service(s) evaluated in the pilot, the benefits and trade-offs.
The references section provides the full references of bibliographic citations.
The appendix includes code examples.
European Commission
10.13039/501100000780
777483
Innovation and consolidation for large scale digitisation of natural heritage