# WARNING: this file is not sorted! # db id alt E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests neg_sites_in_bin neg_sites neg_adj_pvalue log_neg_adj_pvalue fisher_adj_pvalue log_fisher_adj_pvalue 1 MA0018.2 CREB1 1.7e-001 3.2e-004 -8.04 0.0 63 493 248 1450 0.12779 1.3e-006 246 67 525 1.0e0000 0.00 9.3e-001 -0.07 1 MA0028.2 ELK1 5.7e-055 1.1e-057 -131.16 0.0 157 491 503 848 0.31976 4.5e-060 245 177 276 1.7e-025 -57.02 1.0e0000 0.00 1 MA0039.2 Klf4 1.3e-003 2.4e-006 -12.93 0.0 291 491 954 1435 0.59267 9.9e-009 245 336 491 3.9e-003 -5.55 1.0e0000 0.00 1 MA0043.2 HLF 5.0e-005 9.5e-008 -16.16 0.0 151 489 339 824 0.30879 3.9e-010 244 99 312 1.0e0000 0.00 4.0e-001 -0.91 1 MA0050.2 IRF1 2.2e-031 4.2e-034 -76.85 0.0 62 480 304 1123 0.12917 1.8e-036 239 145 446 2.2e-024 -54.49 1.0e0000 0.00 1 MA0051.1 IRF2 2.6e-003 5.1e-006 -12.19 0.0 139 483 97 206 0.28778 2.1e-008 241 36 73 4.0e-002 -3.22 1.0e0000 0.00 1 MA0056.1 MZF1 4.2e0000 8.1e-003 -4.81 0.0 247 495 973 1781 0.49899 3.3e-005 247 341 647 1.0e0000 -0.00 1.0e0000 0.00 1 MA0057.1 MZF1(var.2) 1.9e0000 3.6e-003 -5.62 0.0 129 491 523 1696 0.26273 1.5e-005 245 194 614 3.7e-001 -1.01 1.0e0000 0.00 1 MA0060.2 NFYA 3.9e-003 7.5e-006 -11.81 0.0 185 483 253 503 0.38302 3.1e-008 241 72 162 1.0e0000 -0.00 1.0e0000 -0.00 1 MA0062.2 Gabpa 3.5e-139 6.7e-142 -325.07 0.0 98 490 721 1431 0.20000 2.7e-144 244 254 488 7.7e-053 -120.00 1.0e0000 0.00 1 MA0067.1 Pax2 1.3e0000 2.6e-003 -5.95 0.0 41 493 199 1761 0.08316 1.1e-005 246 60 642 1.0e0000 0.00 1.0e0000 -0.00 1 MA0068.2 PAX4 4.7e-002 9.1e-005 -9.30 0.0 35 493 135 1218 0.07099 3.7e-007 246 22 448 1.0e0000 0.00 2.0e-002 -3.91 1 MA0076.2 ELK4 6.6e-108 1.3e-110 -253.05 0.0 144 490 839 1446 0.29388 5.2e-113 244 292 496 1.4e-039 -89.47 1.0e0000 0.00 1 MA0079.3 SP1 2.3e-010 4.5e-013 -28.43 0.0 182 490 664 1397 0.37143 1.8e-015 244 244 479 1.3e-007 -15.83 1.0e0000 0.00 1 MA0080.4 SPI1 3.9e-121 7.5e-124 -283.50 0.0 83 487 362 595 0.17043 3.1e-126 243 156 216 2.1e-069 -158.12 1.0e0000 0.00 1 MA0081.1 SPIB 2.5e-070 4.9e-073 -166.51 0.0 92 494 656 1757 0.18623 2.0e-075 246 261 648 5.7e-035 -78.84 1.0e0000 0.00 1 MA0083.3 SRF 6.7e-254 1.3e-256 -589.21 0.0 47 485 348 443 0.09691 5.3e-259 242 1 19 1.0e0000 0.00 1.2e-008 -18.23 1 MA0089.1 MAFG::NFE2L1 1.5e0000 2.8e-003 -5.86 0.0 207 495 820 1751 0.41818 1.2e-005 247 264 641 1.0e0000 0.00 8.6e-001 -0.15 1 MA0098.3 ETS1 2.8e-091 5.5e-094 -214.74 0.0 135 491 794 1496 0.27495 2.2e-096 245 276 524 2.3e-031 -70.54 1.0e0000 0.00 1 MA0102.3 CEBPA 4.8e-004 9.2e-007 -13.90 0.0 144 490 285 721 0.29388 3.8e-009 244 93 272 1.0e0000 -0.00 1.0e0000 -0.00 1 MA0108.2 TBP 5.1e-018 9.8e-021 -46.07 0.0 34 486 200 1355 0.06996 4.0e-023 242 18 472 1.0e0000 0.00 8.4e-010 -20.89 1 MA0109.1 HLTF 4.2e-028 8.1e-031 -69.29 0.0 45 491 326 1773 0.09165 3.3e-033 245 52 648 1.0e0000 0.00 9.8e-009 -18.44 1 MA0117.2 Mafb 4.1e-002 7.9e-005 -9.45 0.0 131 489 451 1369 0.26789 3.2e-007 244 141 511 1.0e0000 0.00 9.7e-001 -0.03 1 MA0124.2 Nkx3-1 4.2e-001 8.0e-004 -7.13 0.0 60 492 228 1396 0.12195 3.3e-006 245 96 525 1.0e-002 -4.56 1.0e0000 0.00 1 MA0131.2 HINFP 1.3e-001 2.6e-004 -8.27 0.0 129 489 294 871 0.26380 1.1e-006 244 113 302 4.2e-003 -5.48 1.0e0000 0.00 1 MA0136.2 ELF5 9.4e-121 1.8e-123 -282.62 0.0 112 490 852 1733 0.22857 7.4e-126 244 290 629 3.2e-035 -79.43 1.0e0000 -0.00 1 MA0146.2 Zfx 2.8e0000 5.4e-003 -5.23 0.0 213 487 572 1148 0.43737 2.2e-005 243 179 380 1.0e0000 -0.00 1.0e0000 0.00 1 MA0149.1 EWSR1-FLI1 4.1e0000 8.0e-003 -4.83 0.0 175 483 35 55 0.36232 3.3e-005 241 8 18 1.0e0000 0.00 1.0e0000 -0.00 1 MA0156.2 FEV 7.3e-098 1.4e-100 -229.91 0.0 105 491 710 1539 0.21385 5.8e-103 245 243 529 8.2e-034 -76.19 1.0e0000 0.00 1 MA0161.1 NFIC 7.3e0000 1.4e-002 -4.27 0.0 301 495 1164 1784 0.60808 5.7e-005 247 411 652 1.0e0000 -0.00 1.0e0000 0.00 1 MA0162.2 EGR1 3.3e-010 6.3e-013 -28.09 0.0 159 487 585 1366 0.32649 2.6e-015 243 212 490 1.1e-004 -9.08 1.0e0000 0.00 1 MA0466.2 CEBPB 1.4e-004 2.7e-007 -15.14 0.0 143 491 296 750 0.29124 1.1e-009 245 94 272 1.0e0000 -0.00 1.0e0000 -0.00 1 MA0471.1 E2F6 2.3e0000 4.4e-003 -5.43 0.0 286 490 734 1139 0.58367 1.8e-005 244 278 402 1.3e-003 -6.66 1.0e0000 0.00 1 MA0472.2 EGR2 8.1e-002 1.6e-004 -8.76 0.0 204 490 362 714 0.41633 6.4e-007 244 138 247 1.5e-003 -6.50 1.0e0000 0.00 1 MA0473.2 ELF1 4.2e-092 8.2e-095 -216.64 0.0 119 489 483 824 0.24335 3.4e-097 244 156 266 2.9e-030 -68.01 1.0e0000 0.00 1 MA0474.2 ERG 1.8e-098 3.6e-101 -231.29 0.0 125 491 787 1533 0.25458 1.5e-103 245 261 528 7.9e-030 -67.02 1.0e0000 0.00 1 MA0475.2 FLI1 8.5e-069 1.6e-071 -162.99 0.0 105 491 542 1207 0.21385 6.7e-074 245 190 417 1.6e-025 -57.08 1.0e0000 0.00 1 MA0476.1 FOS 3.7e-001 7.2e-004 -7.24 0.0 212 490 246 455 0.43265 2.9e-006 244 69 138 1.0e0000 -0.00 1.0e0000 0.00 1 MA0477.1 FOSL1 3.0e-001 5.9e-004 -7.44 0.0 166 490 179 397 0.33878 2.4e-006 244 40 114 1.0e0000 0.00 1.0e0000 -0.00 1 MA0478.1 FOSL2 5.4e-001 1.0e-003 -6.86 0.0 126 490 191 557 0.25714 4.3e-006 244 44 162 1.0e0000 0.00 1.0e0000 -0.00 1 MA0488.1 JUN 3.3e-018 6.3e-021 -46.51 0.0 126 488 223 474 0.25820 2.6e-023 243 63 180 6.2e-001 -0.48 5.7e-001 -0.56 1 MA0489.1 JUN(var.2) 9.7e-001 1.9e-003 -6.29 0.0 143 487 237 633 0.29363 7.7e-006 243 65 207 1.0e0000 0.00 1.0e0000 -0.00 1 MA0490.1 JUNB 1.4e-002 2.7e-005 -10.53 0.0 168 490 196 420 0.34286 1.1e-007 244 48 128 1.0e0000 0.00 1.0e0000 -0.00 1 MA0491.1 JUND 2.0e-001 3.9e-004 -7.85 0.0 166 490 142 302 0.33878 1.6e-006 244 32 84 1.0e0000 0.00 1.0e0000 -0.00 1 MA0492.1 JUND(var.2) 6.7e-010 1.3e-012 -27.38 0.0 126 486 184 424 0.25926 5.3e-015 242 49 153 1.0e0000 -0.00 8.8e-001 -0.13 1 MA0493.1 Klf1 4.5e-003 8.7e-006 -11.65 0.0 248 490 714 1224 0.50612 3.6e-008 244 245 412 4.5e-002 -3.10 1.0e0000 0.00 1 MA0501.1 MAF::NFE2 6.8e-002 1.3e-004 -8.93 0.0 182 486 206 418 0.37449 5.4e-007 242 68 156 1.0e0000 -0.00 1.0e0000 -0.00 1 MA0502.1 NFYB 3.0e-001 5.7e-004 -7.46 0.0 262 486 294 455 0.53909 2.4e-006 242 86 147 1.0e0000 -0.00 1.0e0000 -0.00 1 MA0508.1 PRDM1 5.4e-006 1.0e-008 -18.38 0.0 58 486 242 1338 0.11934 4.3e-011 242 93 488 9.3e-004 -6.98 1.0e0000 0.00 1 MA0516.1 SP2 4.0e-014 7.8e-017 -37.09 0.0 178 486 707 1473 0.36626 3.2e-019 242 263 503 1.5e-010 -22.61 1.0e0000 0.00 1 MA0517.1 STAT1::STAT2 1.4e-019 2.7e-022 -49.67 0.0 62 486 279 1179 0.12757 1.1e-024 242 143 464 5.2e-022 -49.00 1.0e0000 0.00 1 MA0528.1 ZNF263 1.1e-002 2.1e-005 -10.79 0.0 138 480 551 1580 0.28750 8.6e-008 239 243 569 2.2e-010 -22.23 1.0e0000 0.00 1 MA0595.1 SREBF1 1.7e-001 3.3e-004 -8.02 0.0 255 491 318 510 0.51935 1.3e-006 245 99 194 1.0e0000 0.00 6.4e-001 -0.44 1 MA0597.1 THAP1 4.7e-002 9.1e-005 -9.31 0.0 228 492 932 1785 0.46341 3.7e-007 245 333 655 9.4e-001 -0.06 1.0e0000 0.00 1 MA0598.2 EHF 8.9e-118 1.7e-120 -275.77 0.0 121 489 725 1311 0.24744 7.0e-123 244 246 449 1.3e-039 -89.57 1.0e0000 0.00 1 MA0599.1 KLF5 3.7e-008 7.1e-011 -23.37 0.0 249 491 823 1360 0.50713 2.9e-013 245 293 485 2.5e-003 -5.99 1.0e0000 0.00 1 MA0602.1 Arid5a 6.1e-001 1.2e-003 -6.74 0.0 25 487 94 1131 0.05133 4.9e-006 243 16 432 1.0e0000 0.00 1.4e-001 -1.99 1 MA0603.1 Arntl 2.5e0000 4.8e-003 -5.34 0.0 197 491 478 1028 0.40122 2.0e-005 245 130 351 1.0e0000 0.00 2.6e-001 -1.36 1 MA0604.1 Atf1 2.0e-014 3.9e-017 -37.80 0.0 117 493 278 715 0.23732 1.6e-019 246 82 238 3.0e-002 -3.51 1.0e0000 -0.00 1 MA0605.1 Atf3 7.7e-012 1.5e-014 -31.84 0.0 167 493 497 1076 0.33874 6.0e-017 246 130 357 1.0e0000 0.00 2.2e-001 -1.51 1 MA0608.1 Creb3l2 1.4e0000 2.7e-003 -5.90 0.0 106 492 101 316 0.21545 1.1e-005 245 28 105 1.0e0000 -0.00 1.0e0000 0.00 1 MA0609.1 Crem 1.3e-008 2.4e-011 -24.45 0.0 111 491 122 289 0.22607 9.9e-014 245 34 87 9.5e-002 -2.35 1.0e0000 0.00 1 MA0615.1 Gmeb1 1.4e-004 2.7e-007 -15.14 0.0 132 484 319 871 0.27273 1.1e-009 241 99 295 9.1e-001 -0.09 1.0e0000 0.00 1 MA0617.1 Id2 4.4e0000 8.6e-003 -4.76 0.0 171 493 81 160 0.34686 3.5e-005 246 20 44 1.0e0000 -0.00 1.0e0000 0.00 1 MA0622.1 Mlxip 8.6e0000 1.6e-002 -4.11 0.0 171 493 80 160 0.34686 6.8e-005 246 19 44 1.0e0000 0.00 1.0e0000 0.00 1 MA0632.1 Tcfl5 7.2e-001 1.4e-003 -6.58 0.0 171 491 461 1119 0.34827 5.7e-006 245 144 369 1.0e0000 -0.00 1.0e0000 0.00 1 MA0636.1 BHLHE41 7.9e-002 1.5e-004 -8.80 0.0 201 491 98 163 0.40937 6.2e-007 245 20 46 1.0e0000 0.00 1.0e0000 -0.00 1 MA0638.1 CREB3 3.5e-002 6.7e-005 -9.62 0.0 65 487 81 346 0.13347 2.7e-007 243 24 127 1.0e0000 -0.00 1.0e0000 0.00 1 MA0639.1 DBP 1.1e-005 2.1e-008 -17.66 0.0 125 489 150 366 0.25562 8.7e-011 244 47 139 9.9e-001 -0.01 1.0e0000 -0.00 1 MA0640.1 ELF3 1.4e-087 2.8e-090 -206.21 0.0 148 488 519 791 0.30328 1.1e-092 243 165 278 3.6e-021 -47.07 1.0e0000 -0.00 1 MA0641.1 ELF4 5.8e-108 1.1e-110 -253.18 0.0 147 489 639 982 0.30061 4.5e-113 244 234 340 1.5e-046 -105.53 1.0e0000 0.00 1 MA0645.1 ETV6 2.0e-144 3.8e-147 -337.14 0.0 73 491 676 1622 0.14868 1.6e-149 245 246 581 4.0e-055 -125.27 1.0e0000 0.00 1 MA0655.1 JDP2 3.7e-002 7.1e-005 -9.55 0.0 234 492 261 438 0.47561 2.9e-007 245 65 129 1.0e0000 0.00 1.0e0000 -0.00 1 MA0656.1 JDP2(var.2) 1.7e-022 3.2e-025 -56.40 0.0 129 489 121 188 0.26380 1.3e-027 244 30 57 5.5e-003 -5.21 1.0e0000 -0.00 1 MA0657.1 KLF13 2.5e-004 4.9e-007 -14.54 0.0 175 483 106 183 0.36232 2.0e-009 241 33 66 9.7e-001 -0.03 1.0e0000 0.00 1 MA0660.1 MEF2B 7.6e-003 1.5e-005 -11.14 0.0 15 489 20 153 0.03067 6.0e-008 244 2 57 1.0e0000 0.00 1.0e0000 -0.00 1 MA0671.1 NFIX 5.5e0000 1.1e-002 -4.54 0.0 252 492 995 1780 0.51220 4.4e-005 245 340 647 1.0e0000 0.00 1.0e0000 -0.00 1 MA0672.1 NKX2-3 3.5e0000 6.7e-003 -5.01 0.0 51 491 201 1455 0.10387 2.7e-005 245 96 541 2.8e-005 -10.47 1.0e0000 0.00 1 MA0685.1 SP4 1.6e-013 3.1e-016 -35.70 0.0 208 484 294 465 0.42975 1.3e-018 241 112 154 1.8e-011 -24.77 1.0e0000 0.00 1 MA0686.1 SPDEF 1.8e-019 3.5e-022 -49.41 0.0 142 490 317 662 0.28980 1.4e-024 244 99 227 4.8e-004 -7.65 1.0e0000 -0.00 1 MA0687.1 SPIC 1.8e-076 3.5e-079 -180.65 0.0 69 487 493 1438 0.14168 1.4e-081 243 172 531 2.2e-024 -54.47 1.0e0000 0.00 1 MA0732.1 EGR3 2.7e-001 5.2e-004 -7.56 0.0 292 486 304 429 0.60082 2.2e-006 242 99 132 5.4e-002 -2.92 1.0e0000 0.00 1 MA0733.1 EGR4 7.0e-003 1.4e-005 -11.21 0.0 319 485 874 1198 0.65773 5.6e-008 242 306 405 3.2e-003 -5.76 1.0e0000 0.00 1 MA0740.1 KLF14 9.6e-013 1.9e-015 -33.92 0.0 223 487 494 813 0.45791 7.6e-018 243 179 278 8.3e-008 -16.31 1.0e0000 0.00 1 MA0741.1 KLF16 1.2e-004 2.4e-007 -15.26 0.0 248 490 808 1377 0.50612 9.7e-010 244 272 464 6.4e-002 -2.75 1.0e0000 0.00 1 MA0742.1 Klf12 5.8e-013 1.1e-015 -34.43 0.0 242 486 490 749 0.49794 4.6e-018 242 142 241 4.9e-001 -0.72 1.0e0000 -0.00 1 MA0746.1 SP3 5.4e-005 1.0e-007 -16.09 0.0 278 490 1064 1659 0.56735 4.2e-010 244 370 576 3.0e-002 -3.51 1.0e0000 0.00 1 MA0747.1 SP8 9.4e-003 1.8e-005 -10.92 0.0 281 489 972 1516 0.57464 7.4e-008 244 351 530 5.5e-003 -5.21 1.0e0000 0.00 1 MA0759.1 ELK3 1.3e-103 2.4e-106 -243.19 0.0 135 491 818 1493 0.27495 9.9e-109 245 291 512 1.2e-041 -94.19 1.0e0000 0.00 1 MA0760.1 ERF 1.1e-086 2.1e-089 -204.19 0.0 97 491 597 1351 0.19756 8.5e-092 245 228 480 2.3e-040 -91.26 1.0e0000 0.00 1 MA0761.1 ETV1 1.8e-093 3.4e-096 -219.83 0.0 135 491 844 1609 0.27495 1.4e-098 245 302 565 5.7e-036 -81.15 1.0e0000 0.00 1 MA0762.1 ETV2 2.0e-065 3.9e-068 -155.21 0.0 118 490 503 1006 0.24082 1.6e-070 244 173 353 8.2e-022 -48.55 1.0e0000 0.00 1 MA0763.1 ETV3 6.0e-050 1.2e-052 -119.58 0.0 139 491 693 1452 0.28310 4.8e-055 245 262 520 6.1e-024 -53.45 1.0e0000 0.00 1 MA0764.1 ETV4 6.2e-093 1.2e-095 -218.58 0.0 125 491 816 1643 0.25458 4.8e-098 245 285 574 4.6e-033 -74.46 1.0e0000 0.00 1 MA0765.1 ETV5 8.6e-097 1.7e-099 -227.45 0.0 135 491 883 1691 0.27495 6.8e-102 245 309 594 4.2e-034 -76.85 1.0e0000 0.00 1 MA0773.1 MEF2D 1.1e-001 2.0e-004 -8.49 0.0 15 489 19 164 0.03067 8.4e-007 244 2 60 1.0e0000 0.00 1.0e0000 -0.00 1 MA0775.1 MEIS3 1.2e-001 2.3e-004 -8.37 0.0 189 493 742 1683 0.38337 9.4e-007 246 248 627 1.0e0000 0.00 1.0e0000 -0.00 1 MA0823.1 HEY1 5.2e-002 1.0e-004 -9.21 0.0 143 491 208 529 0.29124 4.1e-007 245 65 185 1.0e0000 -0.00 1.0e0000 0.00 1 MA0833.1 ATF4 8.4e-015 1.6e-017 -38.66 0.0 146 488 241 485 0.29918 6.7e-020 243 74 169 2.3e-002 -3.79 1.0e0000 -0.00 1 MA0834.1 ATF7 2.0e-026 3.9e-029 -65.42 0.0 123 487 130 202 0.25257 1.6e-031 243 33 60 2.1e-004 -8.46 1.0e0000 -0.00 1 MA0835.1 BATF3 4.0e-009 7.8e-012 -25.58 0.0 89 487 44 77 0.18275 3.2e-014 243 11 28 8.4e-001 -0.17 1.0e0000 -0.00 1 MA0836.1 CEBPD 1.7e-003 3.2e-006 -12.66 0.0 139 491 252 655 0.28310 1.3e-008 245 83 238 9.8e-001 -0.02 1.0e0000 0.00 1 MA0837.1 CEBPE 2.4e-003 4.6e-006 -12.29 0.0 137 491 353 978 0.27902 1.9e-008 245 104 350 1.0e0000 0.00 9.9e-001 -0.01 1 MA0838.1 CEBPG 1.5e-002 2.9e-005 -10.45 0.0 211 491 212 376 0.42974 1.2e-007 245 56 129 1.0e0000 0.00 8.3e-001 -0.19 1 MA0840.1 Creb5 3.7e-022 7.1e-025 -55.60 0.0 121 489 135 232 0.24744 2.9e-027 244 40 79 1.6e-004 -8.75 1.0e0000 -0.00 1 MA0841.1 NFE2 4.8e0000 9.3e-003 -4.68 0.0 218 490 94 155 0.44490 3.8e-005 244 21 45 1.0e0000 0.00 1.0e0000 -0.00 1 MA0842.1 NRL 1.8e0000 3.4e-003 -5.67 0.0 188 490 739 1703 0.38367 1.4e-005 244 234 631 1.0e0000 0.00 5.6e-001 -0.58 1 MA0844.1 XBP1 6.7e-004 1.3e-006 -13.56 0.0 115 487 137 370 0.23614 5.3e-009 243 34 116 1.0e0000 -0.00 1.0e0000 -0.00 1 MA0862.1 GMEB2 6.2e-004 1.2e-006 -13.63 0.0 163 493 308 707 0.33063 4.9e-009 246 96 254 1.0e0000 -0.00 1.0e0000 -0.00 1 MA0878.1 CDX1 6.4e-003 1.2e-005 -11.31 0.0 32 492 147 1425 0.06504 5.0e-008 245 28 534 1.0e0000 0.00 4.3e-002 -3.15 1 MA1099.1 Hes1 9.1e-002 1.7e-004 -8.65 0.0 143 491 538 1545 0.29124 7.1e-007 245 185 544 8.4e-001 -0.17 1.0e0000 0.00 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # E-value: The expected number motifs that would have least one # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization). # neg_sites_in_bin: The number of negative sequences where the best # match to the motif falls in the reported region. # This value is rounded but the underlying value may contain # fractional counts. # Note: This number may be less than the number of negative have a # best match in the region. # The reason for this is that a sequence may have many matches that # score equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # neg_sites: The number of negative sequences containing a match to the # motif above the minimum score threshold. # When score optimization is enabled the score threshold may be raised # higher than the minimum. # neg_adj_pvalue: The probability that any tested region in the negative # sequences would be as enriched for best matches to this motif # according to the Binomial test. # log_neg_adj_pvalue: Log of negative adjusted p-value. # fisher_adj_pvalue: Fisher adjusted p-value before it gets adjusted to the # number of motifs in the input database(s). # Refers to the E-value definition using the discriminative mode. # log_fisher_adj_pvalue: Log of Fisher adjusted p-value.