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annecori-EpiEstim-37308ed
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.Rbuildignore
109 Bytes
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.gitignore
81 Bytes
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.travis.yml
656 Bytes
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DESCRIPTION
1.9 kB
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EpiEstim.Rproj
303 Bytes
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NAMESPACE
1.6 kB
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NEWS.md
4.6 kB
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R
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check_cdt_samples_convergence.R
2.9 kB
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coarse2estim.R
6.7 kB
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compatibility.R
5.4 kB
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data.R
18.1 kB
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discr_si.R
3.0 kB
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estimate_R_plots.R
3.2 kB
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estimate_r.R
26.4 kB
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init_mcmc_params.R
6.2 kB
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make_config.R
15.8 kB
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make_mcmc_control.R
3.9 kB
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overall_infectivity.R
2.7 kB
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plot.R
20.5 kB
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sample_posterior_R.R
2.1 kB
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utilities.R
14.7 kB
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wallinga_teunis.R
13.3 kB
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README.md
666 Bytes
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codecov.yml
176 Bytes
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data
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Flu1918.rda
968 Bytes
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Flu2009.rda
548 Bytes
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Measles1861.rda
636 Bytes
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MockRotavirus.rda
933 Bytes
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SARS2003.rda
1.2 kB
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Smallpox1972.rda
965 Bytes
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flu_2009_NYC_school.rda
351 Bytes
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mers_2014_15.rda
1.6 kB
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fitRotavirus.R
9.4 kB
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man
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DiscrSI.Rd
470 Bytes
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EstimateR.Rd
2.0 kB
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Flu1918.Rd
2.2 kB
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Flu2009.Rd
2.5 kB
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Measles1861.Rd
1.6 kB
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MockRotavirus.Rd
1.8 kB
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OverallInfectivity.Rd
500 Bytes
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SARS2003.Rd
1.8 kB
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Smallpox1972.Rd
1.8 kB
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WT.Rd
1.2 kB
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check_cdt_samples_convergence.Rd
1.5 kB
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coarse2estim.Rd
2.7 kB
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discr_si.Rd
2.2 kB
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estimate_R.Rd
11.1 kB
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estimate_R_plots.Rd
3.1 kB
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flu_2009_NYC_school.Rd
2.3 kB
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init_mcmc_params.Rd
3.5 kB
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make_config.Rd
13.6 kB
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make_mcmc_control.Rd
3.8 kB
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mers_2014_15.Rd
2.8 kB
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overall_infectivity.Rd
2.2 kB
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plot.estimate_R.Rd
5.9 kB
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sample_posterior_R.Rd
1.8 kB
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wallinga_teunis.Rd
5.5 kB
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tests
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expected_output
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Example1.rda
2.2 kB
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Example2.rda
1.9 kB
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Example3.rda
2.4 kB
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Example4.rda
26.8 kB
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figs
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deps.txt
67 Bytes
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flu2009-incidence-import.svg
22.2 kB
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flu2009-instantaneous-no-legend.svg
32.7 kB
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flu2009-rc.svg
8.8 kB
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flu2009-ri.svg
8.8 kB
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flu2009-si.svg
5.4 kB
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testthat
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test-estimate_R.R
2.8 kB
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test-plot.R
1.7 kB
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test-stample_posterior_R.R
1.3 kB
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testthat.R
60 Bytes
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vignettes
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.gitignore
11 Bytes
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demo.Rmd
16.8 kB