Dataset Open Access

Training data for 'Genome annotation with Apollo' tutorial (Galaxy Training Material)

Christine Elsik; Nathan Dunn


JSON Export

{
  "files": [
    {
      "links": {
        "self": "https://zenodo.org/api/files/55133323-b15b-45b4-98c9-dda00288b53f/Amel_4.5_scaffolds.fa.gz"
      }, 
      "checksum": "md5:d20fb0b51cb18f48ed6683fce430385a", 
      "bucket": "55133323-b15b-45b4-98c9-dda00288b53f", 
      "key": "Amel_4.5_scaffolds.fa.gz", 
      "type": "gz", 
      "size": 65335918
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/55133323-b15b-45b4-98c9-dda00288b53f/amel_OGSv3.2_cds.fa.gz"
      }, 
      "checksum": "md5:5880283fb878fa6a7b2db92ee915e344", 
      "bucket": "55133323-b15b-45b4-98c9-dda00288b53f", 
      "key": "amel_OGSv3.2_cds.fa.gz", 
      "type": "gz", 
      "size": 5896125
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/55133323-b15b-45b4-98c9-dda00288b53f/amel_OGSv3.2.gff3.gz"
      }, 
      "checksum": "md5:1a3a4d5a5ce5eb8b6d1911214a8d175a", 
      "bucket": "55133323-b15b-45b4-98c9-dda00288b53f", 
      "key": "amel_OGSv3.2.gff3.gz", 
      "type": "gz", 
      "size": 1749041
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/55133323-b15b-45b4-98c9-dda00288b53f/amel_OGSv3.2_pep.fa.gz"
      }, 
      "checksum": "md5:c7e5f3802d7a68266f0ef5230b3ebbfe", 
      "bucket": "55133323-b15b-45b4-98c9-dda00288b53f", 
      "key": "amel_OGSv3.2_pep.fa.gz", 
      "type": "gz", 
      "size": 3988455
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/55133323-b15b-45b4-98c9-dda00288b53f/forager_Amel4.5_accepted_hits.bam"
      }, 
      "checksum": "md5:6fa615ecb9e56aba486b383cf53b576f", 
      "bucket": "55133323-b15b-45b4-98c9-dda00288b53f", 
      "key": "forager_Amel4.5_accepted_hits.bam", 
      "type": "bam", 
      "size": 4639890323
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/55133323-b15b-45b4-98c9-dda00288b53f/forager_Amel4.5_accepted_hits.bam.bai"
      }, 
      "checksum": "md5:cb343c3c0d72c256c000a7040619d15b", 
      "bucket": "55133323-b15b-45b4-98c9-dda00288b53f", 
      "key": "forager_Amel4.5_accepted_hits.bam.bai", 
      "type": "bai", 
      "size": 966008
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/55133323-b15b-45b4-98c9-dda00288b53f/forager.bw"
      }, 
      "checksum": "md5:e6fc4e4a1f530819cfcdb7b88bbfe9d3", 
      "bucket": "55133323-b15b-45b4-98c9-dda00288b53f", 
      "key": "forager.bw", 
      "type": "bw", 
      "size": 119564375
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/55133323-b15b-45b4-98c9-dda00288b53f/nurse_Amel4.5_accepted_hits.bam"
      }, 
      "checksum": "md5:a28fb3395bb8597729ea1a3c271ab5c0", 
      "bucket": "55133323-b15b-45b4-98c9-dda00288b53f", 
      "key": "nurse_Amel4.5_accepted_hits.bam", 
      "type": "bam", 
      "size": 3987183395
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/55133323-b15b-45b4-98c9-dda00288b53f/nurse_Amel4.5_accepted_hits.bam.bai"
      }, 
      "checksum": "md5:589e3d0e2be79d1cfee860af07540342", 
      "bucket": "55133323-b15b-45b4-98c9-dda00288b53f", 
      "key": "nurse_Amel4.5_accepted_hits.bam.bai", 
      "type": "bai", 
      "size": 932640
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/55133323-b15b-45b4-98c9-dda00288b53f/yeast_chr1%2B2.gff3"
      }, 
      "checksum": "md5:682d48fd67357a497a45f4d2c7a028a7", 
      "bucket": "55133323-b15b-45b4-98c9-dda00288b53f", 
      "key": "yeast_chr1+2.gff3", 
      "type": "gff3", 
      "size": 312303
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/55133323-b15b-45b4-98c9-dda00288b53f/yeast.fa"
      }, 
      "checksum": "md5:664bb7b36e87032b4da70cb95cb5015a", 
      "bucket": "55133323-b15b-45b4-98c9-dda00288b53f", 
      "key": "yeast.fa", 
      "type": "fa", 
      "size": 1060789
    }
  ], 
  "owners": [
    22018
  ], 
  "doi": "10.5281/zenodo.3270822", 
  "stats": {
    "version_unique_downloads": 62.0, 
    "unique_views": 67.0, 
    "views": 76.0, 
    "version_views": 110.0, 
    "unique_downloads": 61.0, 
    "version_unique_views": 82.0, 
    "volume": 412016950754.0, 
    "version_downloads": 152.0, 
    "downloads": 149.0, 
    "version_volume": 412151611045.0
  }, 
  "links": {
    "doi": "https://doi.org/10.5281/zenodo.3270822", 
    "conceptdoi": "https://doi.org/10.5281/zenodo.3270819", 
    "bucket": "https://zenodo.org/api/files/55133323-b15b-45b4-98c9-dda00288b53f", 
    "conceptbadge": "https://zenodo.org/badge/doi/10.5281/zenodo.3270819.svg", 
    "html": "https://zenodo.org/record/3270822", 
    "latest_html": "https://zenodo.org/record/3270822", 
    "badge": "https://zenodo.org/badge/doi/10.5281/zenodo.3270822.svg", 
    "latest": "https://zenodo.org/api/records/3270822"
  }, 
  "conceptdoi": "10.5281/zenodo.3270819", 
  "created": "2019-07-07T15:08:55.618873+00:00", 
  "updated": "2020-01-24T19:25:24.359426+00:00", 
  "conceptrecid": "3270819", 
  "revision": 4, 
  "id": 3270822, 
  "metadata": {
    "access_right_category": "success", 
    "doi": "10.5281/zenodo.3270822", 
    "description": "<p>Published scaffolds from the Apis mellifera assembly Amel_4.5 and Official Gene Set 3.2.</p>\n\n<p>Source:&nbsp;<a href=\"http://hymenopteragenome.org/beebase/?q=download_sequences\">http://hymenopteragenome.org/beebase/?q=download_sequences</a></p>", 
    "license": {
      "id": "CC-BY-4.0"
    }, 
    "title": "Training data for 'Genome annotation with Apollo' tutorial (Galaxy Training Material)", 
    "relations": {
      "version": [
        {
          "count": 3, 
          "index": 2, 
          "parent": {
            "pid_type": "recid", 
            "pid_value": "3270819"
          }, 
          "is_last": true, 
          "last_child": {
            "pid_type": "recid", 
            "pid_value": "3270822"
          }
        }
      ]
    }, 
    "version": "4.5", 
    "keywords": [
      "Apis mellifera", 
      "assembly"
    ], 
    "publication_date": "2019-07-07", 
    "creators": [
      {
        "orcid": "0000-0002-4248-7713", 
        "affiliation": "University of Missouri", 
        "name": "Christine Elsik"
      }, 
      {
        "orcid": "0000-0002-4862-3181", 
        "affiliation": "University of California Berkeley", 
        "name": "Nathan Dunn"
      }
    ], 
    "access_right": "open", 
    "resource_type": {
      "type": "dataset", 
      "title": "Dataset"
    }, 
    "related_identifiers": [
      {
        "scheme": "doi", 
        "identifier": "10.5281/zenodo.3270819", 
        "relation": "isVersionOf"
      }
    ]
  }
}
110
152
views
downloads
All versions This version
Views 11076
Downloads 152149
Data volume 412.2 GB412.0 GB
Unique views 8267
Unique downloads 6261

Share

Cite as