10.5281/zenodo.3269404
https://zenodo.org/records/3269404
oai:zenodo.org:3269404
Pratik Jagtap
Pratik Jagtap
0000-0003-0984-0973
University of Minnesota
Subina Mehta
Subina Mehta
University of Minnesota
Praveen Kumar
Praveen Kumar
University of Minnesota
Trimmed RNASeq pair for the Galaxy Training Network tutorial - "Metatranscriptomics analysis using microbiome RNASeq data"
Zenodo
2019
Metatranscriptomics
Functional microbiome
RNA-Seq
Taxonomy
Function
2019-07-05
eng
10.1038/s41396-018-0290-y
https://www.ncbi.nlm.nih.gov/sra/SRX3777369
10.5281/zenodo.3269403
https://zenodo.org/communities/galaxy-training
Creative Commons Attribution 4.0 International
Functional microbiome analysis which estimates the functional groups expressed by microbial community enables researchers to look beyond taxonomic composition and correlation with the condition under study. Using microbial community RNA-Seq data and subsequent metatranscriptomics workflows to elucidate the functional complement of the microbiome is gaining interest in the field.
This Galaxy training network tutorial will introduce researchers to the basic concepts and tools from the published ASaiM workflow (Batut et al, GigaScience (2018), 7 (6), http://dx.doi.org/10.1093/gigascience/giy057).
The dataset is a trimmed version of one of the time points from a cellulose degradation biogas reactor dataset. The dataset has been trimmed to facilitate running the workflows for this tutorial. Any biological interpretation from the results would be incorrect, due to the trimmed version of the dataset.