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ghislainv/jSDM: jSDM CRAN release v0.1.0: Joint Species Distribution Models

Ghislain Vieilledent; Jeanne Clément

jSDM v0.1.0 for Joint Species Distribution Models

Changes

  • First version of the jSDM R package
  • Use of Rcpp and C++ code for Gibbs sampling
  • Use of GSL (RcppGSL) for random draws
  • Use of Armadillo (RcppArmadillo) for vector and matrix operations
  • Functions to fit models from Warton et al. 2014 Trends in Ecology and Evolution (doi:10.1016/j.tree.2015.09.007).
  • We use pkgdown to build package website.
  • Package website available on GitHub: https://ecology.ghislainv.fr/jSDM.

Install this release

From CRAN or using the devtools::install_github() function in R:

devtools::install_github(repo="ghislainv/jSDM", ref="v0.1.0")̀

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Publication date:
June 24, 2019
DOI:
10.5281/zenodo.3253461

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Keyword(s):
species distribution Rcpp joint models latent variables C++ biodiversity Gibbs sampler MCMC species interactions
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License (for files):
GNU General Public License v3.0 only

Versions

Version v0.1.0 10.5281/zenodo.3253461 Jun 24, 2019
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