3250687
doi
10.5281/zenodo.3250687
oai:zenodo.org:3250687
user-ro
user-eu
Goble, Carole
The University of Manchester
Sefton, Peter
University of Technology Sydney
Soiland-Reyes, Stian
The University of Manchester
A lightweight approach to research object data packaging
Ó Carragáin, Eoghan
University College Cork
url:http://www.researchobject.org/ro-crate/
url:http://github.com/researchobject/ro-crate
doi:10.1038/533452a
doi:10.1016/j.future.2011.08.004
doi:10.1016/j.websem.2015.01.003
doi:10.1109/eScience.2017.40
doi:10.5281/zenodo.51314
doi:10.1101/268755
doi:10.5281/zenodo.1966881
doi:10.5281/zenodo.1301152
doi:10.1371/journal.pbio.3000099
doi:10.5281/zenodo.1445817
doi:10.1145/2844544
url:https://w3id.org/ro/2016-01-28/
url:http://www.rohub.org/
url:https://w3id.org/bundle/
doi:10.5281/zenodo.12586
url:https://tools.ietf.org/html/rfc8493
doi:10.17487/rfc8493
url:https://rd-alliance.org/
url:https://www.force11.org/
url:https://www.dataone.org/
url:https://frictionlessdata.io/specs/
url:https://github.com/biocompute-objects/BCO_Specification
url:https://codemeta.github.io/
url:https://psych-ds.github.io/
url:https://github.com/UTS-eResearch/datacrate
url:https://data.research.uts.edu.au/examples/v1.0/datacrate-RO-2018/data/paper.html
url:https://docs.google.com/document/d/155lA2BcixTl-zwJHGfLkxsmg7WmQbBK00QWyP8QggkE/edit?usp=sharing
url:https://schema.org/
url:https://json-ld.org/
url:https://rd-alliance.org/approaches-research-data-packaging-rda-11th-plenary-bof-meeting
url:http://www.researchobject.org/overview/
url:https://bioschemas.org/
url:https://elixir-europe.org/news/eosc-life-start
url:https://jupyter.org/
url:https://github.com/ResearchObject/ro-lite/issues/1
url:https://www.research.manchester.ac.uk/portal/en/publications/a-lightweight-approach-to-research-object-data-packaging(5bbfec09-5ff7-43a8-a333-eb0eb0eda6f5).html
handle:oai:pure.atira.dk:publications/5bbfec09-5ff7-43a8-a333-eb0eb0eda6f5
doi:10.5281/zenodo.3343031
doi:10.7490/f1000research.1117129.1
url:https://slides.com/soilandreyes/2019-07-24-bosc-ro-crate
url:https://www.youtube.com/watch?v=AociW94muLM
info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
data packaging
research object
linked data
<p>A <strong>Research Object</strong> (RO) provides a machine-readable mechanism to communicate the diverse set of digital and real-world resources that contribute to an item of research. The aim of an RO is to evolve from traditional academic publication as a static PDF, to rather provide a complete and structured archive of the items (such as people, organisations, funding, equipment, software etc) that contributed to the research outcome, including their identifiers, provenance, relations and annotations.</p>
<p>This is of particular importance as all domains of research and science are increasingly relying on computational analysis, yet we are facing a reproducibility crisis because key components are often not sufficiently tracked, archived or reported.</p>
<p>Here we propose <strong>Research Object Crate</strong> (or <strong>RO-Crate</strong> for short), an emerging lightweight approach to packaging research data with their structured metadata, rephrasing the Research Object model as schema.org annotations to formalize a JSON-LD format that can be used independently of infrastructure, e.g. in GitHub or Zenodo archives. RO-Crate can be extended for domain-specific descriptions, aiming at a wide variety of applications and repositories to encourage FAIR sharing of reproducible datasets and analytical methods.</p>
Abstract accepted for talk at Bioinformatics Open Source Conference (BOSC2019).
Slides https://doi.org/10.7490/f1000research.1117129.1 Poster https://doi.org/10.7490/f1000research.1117130.1
Video recording https://www.youtube.com/watch?v=AociW94muLM
Zenodo
2019-06-20
info:eu-repo/semantics/conferencePaper
2636996
user-ro
user-eu
award_title=BioExcel Centre of Excellence for ComputationalBiomolecular Research; award_number=823830; award_identifiers_scheme=url; award_identifiers_identifier=https://cordis.europa.eu/projects/823830; funder_id=00k4n6c32; funder_name=European Commission;
award_title=Centre of Excellence for Biomolecular Research; award_number=675728; award_identifiers_scheme=url; award_identifiers_identifier=https://cordis.europa.eu/projects/675728; funder_id=00k4n6c32; funder_name=European Commission;
1690379609.266627
156343
md5:1e6fa2c6976d22ae10e54b9418ff0c4c
https://zenodo.org/records/3250687/files/RO-Crate-BOSC2019.pdf
public
http://www.researchobject.org/ro-crate/
Documents
url
http://github.com/researchobject/ro-crate
Documents
url
10.1038/533452a
Cites
doi
10.1016/j.future.2011.08.004
Cites
doi
10.1016/j.websem.2015.01.003
Cites
doi
10.1109/eScience.2017.40
Cites
doi
10.5281/zenodo.51314
Cites
doi
10.1101/268755
Cites
doi
10.5281/zenodo.1966881
Cites
doi
10.5281/zenodo.1301152
Cites
doi
10.1371/journal.pbio.3000099
Cites
doi
10.5281/zenodo.1445817
Cites
doi
10.1145/2844544
Cites
doi
https://w3id.org/ro/2016-01-28/
References
url
http://www.rohub.org/
References
url
https://w3id.org/bundle/
References
url
10.5281/zenodo.12586
References
doi
https://tools.ietf.org/html/rfc8493
References
url
10.17487/rfc8493
References
doi
https://rd-alliance.org/
References
url
https://www.force11.org/
References
url
https://www.dataone.org/
References
url
https://frictionlessdata.io/specs/
References
url
https://github.com/biocompute-objects/BCO_Specification
References
url
https://codemeta.github.io/
References
url
https://psych-ds.github.io/
References
url
https://github.com/UTS-eResearch/datacrate
References
url
https://data.research.uts.edu.au/examples/v1.0/datacrate-RO-2018/data/paper.html
Cites
url
https://docs.google.com/document/d/155lA2BcixTl-zwJHGfLkxsmg7WmQbBK00QWyP8QggkE/edit?usp=sharing
References
url
https://schema.org/
References
url
https://json-ld.org/
References
url
https://rd-alliance.org/approaches-research-data-packaging-rda-11th-plenary-bof-meeting
References
url
http://www.researchobject.org/overview/
References
url
https://bioschemas.org/
References
url
https://elixir-europe.org/news/eosc-life-start
References
url
https://jupyter.org/
References
url
https://github.com/ResearchObject/ro-lite/issues/1
References
url
https://www.research.manchester.ac.uk/portal/en/publications/a-lightweight-approach-to-research-object-data-packaging(5bbfec09-5ff7-43a8-a333-eb0eb0eda6f5).html
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oai:pure.atira.dk:publications/5bbfec09-5ff7-43a8-a333-eb0eb0eda6f5
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10.5281/zenodo.3343031
Is supplemented by
doi
10.7490/f1000research.1117129.1
Is supplemented by
doi
https://slides.com/soilandreyes/2019-07-24-bosc-ro-crate
Is supplemented by
url
https://www.youtube.com/watch?v=AociW94muLM
Is supplemented by
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10.5281/zenodo.2636996
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