Dataset Open Access

Tissue blocks for EBV detection in stomach cancer

Kather, Jakob Nikolas


JSON-LD (schema.org) Export

{
  "description": "<p>Tissue blocks from hematoxylin and eosin (H&amp;E) images of stomach adenocarcinoma samples (STAD) from our validation cohort</p>\n\n<p>They are grouped into four classes:</p>\n\n<ul>\n\t<li>false negative: true EBV+ patient, block predicted to be EBV-</li>\n\t<li>false positive: true EBV- patient, block predicted to be EBV+</li>\n\t<li>true negative: true EBV- patient, block predicted to be EBV-</li>\n\t<li>true positive: true EBV+ patient, block predicted to be EBV+</li>\n</ul>\n\n<p>all blocks are 224 x 224 px, corresponding to 256x256 &micro;m</p>\n\n<p>The blocks represent only a subset of the full validation cohort, selected as follows</p>\n\n<ol>\n\t<li>from each patient, only a maximum of 50 randomly drawn blocks was used</li>\n\t<li>we saved the upper and lower quartile (sorted by EBV score)</li>\n\t<li>we then grouped into true and false positive (high EBV score) and negative (low EBV score), respectively</li>\n</ol>", 
  "license": "http://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "RWTH University Aachen", 
      "@id": "https://orcid.org/0000-0002-3730-5348", 
      "@type": "Person", 
      "name": "Kather, Jakob Nikolas"
    }
  ], 
  "url": "https://zenodo.org/record/3247009", 
  "datePublished": "2019-06-16", 
  "version": "v0.1", 
  "@context": "https://schema.org/", 
  "distribution": [
    {
      "contentUrl": "https://zenodo.org/api/files/7cf40388-2871-4a54-87ad-37572274961d/falseNegative.zip", 
      "@type": "DataDownload", 
      "fileFormat": "zip"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/7cf40388-2871-4a54-87ad-37572274961d/falsePositive.zip", 
      "@type": "DataDownload", 
      "fileFormat": "zip"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/7cf40388-2871-4a54-87ad-37572274961d/trueNegative.zip", 
      "@type": "DataDownload", 
      "fileFormat": "zip"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/7cf40388-2871-4a54-87ad-37572274961d/truePositive.zip", 
      "@type": "DataDownload", 
      "fileFormat": "zip"
    }
  ], 
  "identifier": "https://doi.org/10.5281/zenodo.3247009", 
  "@id": "https://doi.org/10.5281/zenodo.3247009", 
  "@type": "Dataset", 
  "name": "Tissue blocks for EBV detection in stomach cancer"
}
337
45
views
downloads
All versions This version
Views 337337
Downloads 4545
Data volume 4.6 GB4.6 GB
Unique views 282282
Unique downloads 2222

Share

Cite as