3241901
doi
10.5281/zenodo.3241901
oai:zenodo.org:3241901
Nicole Anguiano
Eileen Choe
dondi
Anindita Varshneya
John Lopez
Jen Shin
Britain Southwick
Kam Dahlquist
Loyola Marymount University
Blair Hamilton
Edward Bachoura
ArashLari
Eddie Azinge
Justin Kyle Torres
@lmucs
ZACH VAN YSSELDYK
Alexia
jiajialingling
B.J. Johnson
Loyola Marymount University
dondi/GRNsight: v4.0.0
Mihir Samdarshi
url:https://github.com/dondi/GRNsight/tree/v4.0.0
info:eu-repo/semantics/openAccess
Other (Open)
<p>GRNsight v4.0.0 includes the following new features and bug fixes:</p>
<ul>
<li>GRNsight now follows a strict Model-View-Controller paradigm for its basic architecture. Except for the graphs, all elements displayed in the iframe (the main GRNsight functionality) now follow this architecture. These changes have occurred "under the hood" and will not be noticeable to users, except that it has made GRNsight more robust and has facilitated fixing many bugs caused by the interactions of new features introduced in previous versions. (#576, #735)<ul>
<li>Force Graph Parameter slider values are saved when a graph is uploaded. (#760)</li>
<li>The File > Reload menu option reloads the graph in the layout configuration it was previously in. (#600)</li>
<li>Reset and Undo Reset Buttons are now grayed out when the Force Graph Parameter sliders are locked. (#245)</li>
<li>Various bugs that arose from the refactor are now fixed. (#592, #598, #610, #687, #736, #753, #758, #769, #772, #774, #778, #779)</li>
</ul>
</li>
<li>The Gene Page feature was improved both in its layout and "under the hood" to make database API calls and queries more robust. Changes were made to eventually enable the retrieval of gene information for genes from species other than <em>Saccharomyces cerevisiae</em>. (#621, #644, #654, #655, #658, #665, #676, #679, #680, #681, #689, #690, #691, #694, #695, #696, #697, #698, #701, #704, #709, #718, #722, #723, #730, #737)<ul>
<li>Gene page variables are also now a part of <code>GRNstate</code> in the Model-View-Controller paradigm. (#719)</li>
</ul>
</li>
<li>Zoom levels remain consistent despite any user-defined parameter changes. (#561, #751)</li>
<li>A bug was fixed in the automatic selection of the edge weight normalization factor. GRNsight now correctly uses the highest magnitude weight value for the default normalization factor, disregarding the sign of the weight. (#708)</li>
<li>Gray edges now only have one thickness. (#437)</li>
<li>GRNsight now returns an error when a file is too large. (#747, #766)</li>
<li>The dropdown menu and sidebar menu viewport sizes now initialize to the same values. (#599)</li>
<li>The Log Fold Change Max Value field will only accept positive values, and the allowable range has been set to 0.01 - 100. (#759)</li>
<li>GRNsight is now wholly served over HTTPS. (#327, #688)</li>
<li>GRNsight libraries and documentation were updated. (#715, #717)</li>
</ul>
Zenodo
2019-06-08
info:eu-repo/semantics/other
598025
v4.0.0
1694535676.433591
123911410
md5:09c526783bbca4c45064f9e2816c2020
https://zenodo.org/records/3241901/files/dondi/GRNsight-v4.0.0.zip
public
https://github.com/dondi/GRNsight/tree/v4.0.0
Is supplement to
url
10.5281/zenodo.598025
isVersionOf
doi