3234520
doi
10.5281/zenodo.3234520
oai:zenodo.org:3234520
user-eu
Mitchell, Alex
EMBL-EBI
Cochrane, Guy
EMBL-EBI
Burgin, Josephine
EMBL-EBI
Willassen, Nils Peder
UiT
ELIXIR-EXCELERATE D6.4: Report on assessment criteria and standardisation of metagenome assembled genomes (MAGs) from Marine samples
Finn, Robert
EMBL-EBI
info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
Metagenome
MAG
metagenome assembled genome
single amplified genome
SAG
MarRef
MarDB
<ul>
<li>
<p>Demonstration of the application of completeness/contamination estimates on metagenome assembled genomes (MAGs) produced as part of WP6. These results of these estimates are discussed in relationship of the MIMAGs and MISAGs standards.</p>
</li>
<li>
<p>Survey of the genomes, MAGs and single amplified genomes (SAGs) found in the MAR database. This demonstrates that many of the draft genomes are heavily contaminated and/or incomplete.</p>
</li>
<li>
<p>Description of the new infrastructure in the European Nucleotide Archive, and how this has been structured to accommodate the data generated within WP6 (and more broadly).</p>
</li>
<li>
<p>We also highlight the current limitations and issues of the tools employed to estimate completeness and contamination.</p>
</li>
</ul>
Zenodo
2019-05-29
info:eu-repo/semantics/report
3234519
user-eu
award_title=ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences.; award_number=676559; award_identifiers_scheme=url; award_identifiers_identifier=https://cordis.europa.eu/projects/676559; funder_id=00k4n6c32; funder_name=European Commission;
1579542102.986962
1040849
md5:bfb49fecbc878a9f7aaa6bab46c21362
https://zenodo.org/records/3234520/files/EXCELERATE Deliverable D6.4.pdf
public
10.5281/zenodo.3234519
isVersionOf
doi