10.5281/zenodo.3228302
https://zenodo.org/records/3228302
oai:zenodo.org:3228302
Mitchell, Alex
Alex
Mitchell
EMBL-EBI
Scheremetjew, Maxim
Maxim
Scheremetjew
EMBL-EBI
De Moro, Gianluca
Gianluca
De Moro
CCMAR
Fosso, Bruno
Bruno
Fosso
CNR
Santamaria, Monica
Monica
Santamaria
CNR
Pesole, Graziano
Graziano
Pesole
CNR
Raj, Shriya
Shriya
Raj
EMBL-EBI
Bongo, Lars Ailo
Lars Ailo
Bongo
UiT
Willassen, Nils Peder
Nils Peder
Willassen
UiT
Finn, Robert D.
Robert D.
Finn
EMBL-EBI
ELIXIR-EXCELERATE D6.3: Report describing a set of tools, pipelines and search engine for interrogation of marine metagenomic data.
Zenodo
2019
Marine
metagenomic
data
tools
pipelines
2019-05-24
eng
Project deliverable
10.5281/zenodo.3228301
https://zenodo.org/communities/eu
Creative Commons Attribution 4.0 International
● Pipelines expanded to increase scope of analysis, tools updated and tailoring of analysis to meet the demands of the Marine Metagenomics community.
● Analysis pipelines described in the Common Workflow Language (CWL) to enable reproducibility, facilitate comparisons and enhance development agility.
● Benchmark datasets generated for evaluating amplicon analyses across a range of biomes and 6 different marine shotgun metagenomics datasets developed.
● Cloud deployment of pipelines to increase compute capacity.
● New data analysis outputs that will feed the databases developed as part of this work package.
● Examples generated for federating searches across resource programmatic interfaces.
● Wide range of different training activities and material developed.
● Major interaction with Compute (WP4) and Interoperability (WP5) platforms in sharing problems and driving solutions (e.g. AAI and CWL, respectively)
European Commission
10.13039/501100000780
676559
ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences.