31364
doi
10.5281/zenodo.31364
oai:zenodo.org:31364
Posch, Stefan
Institute of Computer Science, Martin Luther University Halle-Wittenberg, Germany
Glass, Markus
Institute of Molecular Medicine, Martin Luther University Halle-Wittenberg, Germany
Misiak, Danny
Institute of Molecular Medicine, Martin Luther University Halle-Wittenberg, Germany
MiToBo - A Microscope Image Analysis Toolbox: v1.7
Moeller, Birgit
Institute of Computer Science, Martin Luther University Halle-Wittenberg, Germany
url:http://www.informatik.uni-halle.de/mitobo
url:https://github.com/mitobo-hub/mitobo
url:https://github.com/mitobo-hub/mitobo-plugins
info:eu-repo/semantics/openAccess
GNU General Public License v2.0 only
https://www.gnu.org/licenses/old-licenses/gpl-2.0-standalone.html
Image Analysis
Image Processing
Java Library
<p>The Microscope Image Analysis Toolbox MiToBo is a Java toolbox and library of basic, intermediate and advanced image processing and analysis algorithms and tools. The toolbox for instance offers various filters (e.g., Gauss and Gabor filters, rank operators, vesselness filters), image enhancement approaches, image transformations (e.g., wavelets) and segmentation algorithms (e.g., thresholding, component labeling, active contours). In addition it ships with several advanced tools mainly dedicated to specific tasks in biomedical or biological image analysis, but not restricted to these fields. Examples are tools for DAPI stained nuclei detection, neurite segmentation, cell segmentation and tracking, and particle detection.</p>
<p>MiToBo builds upon and extends the widely used image processing application ImageJ (http://imagej.nih.gov/ij/). All of its operators can be run from within ImageJ, but stand-alone usage or using MiToBo as a library for your own development is also possible. Finally, since MiToBo is based on Alida (http://www.informatik.uni-halle.de/alida), an advanced library for integrated development of data analysis applications, it offers a user- and programmer friendly framework for developing new image processing and analysis algorithms including automatic generation of user interfaces and a graphical workflow editor.</p>
The MiToBo distribution is available in two versions. The basic version (file mitobo-1.7-bin.zip) contains MiToBo with all its operators, algorithms, start scripts and documentation while the extended version (file mitobo-plugins-1.7-bin.zip) also includes ImageJ plugins for directly integrating and running MiToBo from within ImageJ.
Zenodo
2015-09-24
info:eu-repo/semantics/other
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md5:331b23457f5be2629ffe6f0ed6a39150
https://zenodo.org/records/31364/files/mitobo-1.7-bin.zip
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md5:bbf93e8eccfcf62d04bf632485ac2b51
https://zenodo.org/records/31364/files/mitobo-plugins-1.7-bin.zip
public
http://www.informatik.uni-halle.de/mitobo
Is supplement to
url
https://github.com/mitobo-hub/mitobo
Is supplement to
url
https://github.com/mitobo-hub/mitobo-plugins
Is supplement to
url
isVersionOf
doi