10.5281/zenodo.3063173
https://zenodo.org/records/3063173
oai:zenodo.org:3063173
Karr, Jonathan R
Jonathan R
Karr
0000-0002-2605-5080
Icahn Institute and Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, US
Lluch-Senar, Maria
Maria
Lluch-Senar
0000-0001-7568-4353
Center for Genomic Regulation, Barcelona, ES
Kastelic, Damjana
Damjana
Kastelic
Center for Genomic Regulation, Barcelona, ES
Serrano, Luis
Luis
Serrano
0000-0002-5276-1392
Center for Genomic Regulation, Barcelona, ES
Sauro, Herbert M
Herbert M
Sauro
0000-0002-3659-6817
Department of Bioengineering, University of Washington, Seattle, WA, US
Initiatives to Build a Whole-Cell Modeling Community: 2019 Update
Zenodo
2019
systems biology
computational biology
dynamical modeling
cell biology
whole-cell modeling
bioinformatics
summer school
2019-05-20
10.5281/zenodo.3063172
https://zenodo.org/communities/integrativemodeling
https://zenodo.org/communities/bioinformatics
Creative Commons Attribution 4.0 International
Whole-cell (WC) models that predict phenotype from genotype have the potential to transform biology, bioengineering, and medicine. Achieving WC models will likely require collaboration among modelers, experimentalists, mathematicians, computer scientists, and engineers. In 2012, we and others began to build a WC community by organizing a central website, a primer, schools, hackathons, and challenges. This year, we have continued to build a WC community by developing a new website, expanding the primer, organizing a third school, and launching an online seminar. Here, we summarize these initiatives, their impact to date, and our plans to continue to build a WC community.
These efforts were supported by National Science Foundation awards 1548123 and 1649014 to JRK, National Institutes of Health award R35 GM119771 to JRK, and National Institutes of Health award P41 EB023912 to Herbert Sauro. The 2019 school was also supported by an EMBO Practical Course award to JRK, MLS, and DK.
National Science Foundation
10.13039/100000001
1548123
ERASynBio: MiniCell - A Model-driven Approach to Minimal Cell Engineering