Dataset Open Access

Training data for 'Exome sequencing data analysis' tutorial (Galaxy Training Material)

Maier, Wolfgang


MARC21 XML Export

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    <subfield code="a">Training data for 'Exome sequencing data analysis' tutorial (Galaxy Training Material)</subfield>
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    <subfield code="a">&lt;p&gt;The data used in this tutorial are a subset of the data&amp;nbsp;published previously in&amp;nbsp;&lt;a href="https://zenodo.org/record/3243160"&gt;Training material for the course &amp;quot;Exome analysis with GALAXY&amp;quot;&lt;/a&gt;. Credit for uploading the original data goes to&amp;nbsp;Paolo Uva and Gianmauro&amp;nbsp;Cuccuru!&lt;/p&gt;

&lt;p&gt;Specifically, you may need the following datasets for following the tutorial:&lt;/p&gt;

&lt;p&gt;&lt;strong&gt;Raw sequencing reads&lt;/strong&gt;&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/father_R1.fq.gz?download=1"&gt;https://zenodo.org/record/3243160/files/father_R1.fq.gz&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/father_R2.fq.gz?download=1"&gt;https://zenodo.org/record/3243160/files/father_R2.fq.gz&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/mother_R1.fq.gz?download=1"&gt;https://zenodo.org/record/3243160/files/mother_R1.fq.gz&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/mother_R2.fq.gz?download=1"&gt;https://zenodo.org/record/3243160/files/mother_R2.fq.gz&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/proband_R1.fq.gz?download=1"&gt;https://zenodo.org/record/3243160/files/proband_R1.fq.gz&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/proband_R2.fq.gz?download=1"&gt;https://zenodo.org/record/3243160/files/proband_R2.fq.gz&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;&lt;strong&gt;Premapped sequencing reads&lt;/strong&gt;&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/mapped_reads_father.bam?download=1"&gt;https://zenodo.org/record/3243160/files/mapped_reads_father.bam&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/mapped_reads_mother.bam?download=1"&gt;https://zenodo.org/record/3243160/files/mapped_reads_mother.bam&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/mapped_reads_proband.bam?download=1"&gt;https://zenodo.org/record/3243160/files/mapped_reads_proband.bam&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;&lt;strong&gt;Reference sequence (human chromosome 8)&lt;/strong&gt;&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/hg19_chr8.fa.gz?download=1"&gt;https://zenodo.org/record/3243160/files/hg19_chr8.fa.gz&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;&amp;nbsp;&lt;/p&gt;

&lt;p&gt;If you would just like to play with GEMINI rather than work through the full tutorial, you&amp;#39;ll find below a prebuilt GEMINI database (for GEMINI version 0.20.1) for the family trio. You can start exploring this database without having to run GEMINI load&amp;nbsp;and, in fact, without having to install GEMINI&amp;#39;s bundled annotation data.&lt;/p&gt;</subfield>
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