Dataset Open Access

Training data for 'Exome sequencing data analysis' tutorial (Galaxy Training Material)

Maier, Wolfgang


Dublin Core Export

<?xml version='1.0' encoding='utf-8'?>
<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:creator>Maier, Wolfgang</dc:creator>
  <dc:date>2019-05-20</dc:date>
  <dc:description>The data used in this tutorial are a subset of the data published previously in Training material for the course "Exome analysis with GALAXY". Credit for uploading the original data goes to Paolo Uva and Gianmauro Cuccuru!

Specifically, you may need the following datasets for following the tutorial:

Raw sequencing reads


	https://zenodo.org/record/3243160/files/father_R1.fq.gz
	https://zenodo.org/record/3243160/files/father_R2.fq.gz
	https://zenodo.org/record/3243160/files/mother_R1.fq.gz
	https://zenodo.org/record/3243160/files/mother_R2.fq.gz
	https://zenodo.org/record/3243160/files/proband_R1.fq.gz
	https://zenodo.org/record/3243160/files/proband_R2.fq.gz


Premapped sequencing reads


	https://zenodo.org/record/3243160/files/mapped_reads_father.bam
	https://zenodo.org/record/3243160/files/mapped_reads_mother.bam
	https://zenodo.org/record/3243160/files/mapped_reads_proband.bam


Reference sequence (human chromosome 8)


	https://zenodo.org/record/3243160/files/hg19_chr8.fa.gz


 

If you would just like to play with GEMINI rather than work through the full tutorial, you'll find below a prebuilt GEMINI database (for GEMINI version 0.20.1) for the family trio. You can start exploring this database without having to run GEMINI load and, in fact, without having to install GEMINI's bundled annotation data.</dc:description>
  <dc:identifier>https://zenodo.org/record/3054169</dc:identifier>
  <dc:identifier>10.5281/zenodo.3054169</dc:identifier>
  <dc:identifier>oai:zenodo.org:3054169</dc:identifier>
  <dc:language>eng</dc:language>
  <dc:relation>doi:10.5281/zenodo.641031</dc:relation>
  <dc:relation>doi:10.5281/zenodo.3054168</dc:relation>
  <dc:relation>url:https://zenodo.org/communities/galaxy-training</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>https://creativecommons.org/licenses/by/4.0/legalcode</dc:rights>
  <dc:subject>training</dc:subject>
  <dc:subject>Galaxy</dc:subject>
  <dc:subject>variant analysis</dc:subject>
  <dc:subject>exome sequencing</dc:subject>
  <dc:title>Training data for 'Exome sequencing data analysis' tutorial (Galaxy Training Material)</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>dataset</dc:type>
</oai_dc:dc>
12,700
199
views
downloads
All versions This version
Views 12,70012,723
Downloads 199199
Data volume 43.6 GB43.6 GB
Unique views 11,19811,218
Unique downloads 172172

Share

Cite as