Dataset Open Access

Training data for 'Exome sequencing data analysis' tutorial (Galaxy Training Material)

Maier, Wolfgang


JSON-LD (schema.org) Export

{
  "inLanguage": {
    "alternateName": "eng", 
    "@type": "Language", 
    "name": "English"
  }, 
  "description": "<p>The data used in this tutorial are a subset of the data&nbsp;published previously in&nbsp;<a href=\"https://zenodo.org/record/3243160\">Training material for the course &quot;Exome analysis with GALAXY&quot;</a>. Credit for uploading the original data goes to&nbsp;Paolo Uva and Gianmauro&nbsp;Cuccuru!</p>\n\n<p>Specifically, you may need the following datasets for following the tutorial:</p>\n\n<p><strong>Raw sequencing reads</strong></p>\n\n<ul>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/father_R1.fq.gz?download=1\">https://zenodo.org/record/3243160/files/father_R1.fq.gz</a></li>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/father_R2.fq.gz?download=1\">https://zenodo.org/record/3243160/files/father_R2.fq.gz</a></li>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/mother_R1.fq.gz?download=1\">https://zenodo.org/record/3243160/files/mother_R1.fq.gz</a></li>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/mother_R2.fq.gz?download=1\">https://zenodo.org/record/3243160/files/mother_R2.fq.gz</a></li>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/proband_R1.fq.gz?download=1\">https://zenodo.org/record/3243160/files/proband_R1.fq.gz</a></li>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/proband_R2.fq.gz?download=1\">https://zenodo.org/record/3243160/files/proband_R2.fq.gz</a></li>\n</ul>\n\n<p><strong>Premapped sequencing reads</strong></p>\n\n<ul>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/mapped_reads_father.bam?download=1\">https://zenodo.org/record/3243160/files/mapped_reads_father.bam</a></li>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/mapped_reads_mother.bam?download=1\">https://zenodo.org/record/3243160/files/mapped_reads_mother.bam</a></li>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/mapped_reads_proband.bam?download=1\">https://zenodo.org/record/3243160/files/mapped_reads_proband.bam</a></li>\n</ul>\n\n<p><strong>Reference sequence (human chromosome 8)</strong></p>\n\n<ul>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/hg19_chr8.fa.gz?download=1\">https://zenodo.org/record/3243160/files/hg19_chr8.fa.gz</a></li>\n</ul>\n\n<p>&nbsp;</p>\n\n<p>If you would just like to play with GEMINI rather than work through the full tutorial, you&#39;ll find below a prebuilt GEMINI database (for GEMINI version 0.20.1) for the family trio. You can start exploring this database without having to run GEMINI load&nbsp;and, in fact, without having to install GEMINI&#39;s bundled annotation data.</p>", 
  "license": "https://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "@id": "https://orcid.org/0000-0002-9464-6640", 
      "@type": "Person", 
      "name": "Maier, Wolfgang"
    }
  ], 
  "url": "https://zenodo.org/record/3054169", 
  "citation": [
    {
      "@id": "https://doi.org/10.5281/zenodo.641031", 
      "@type": "CreativeWork"
    }
  ], 
  "datePublished": "2019-05-20", 
  "version": "1.0", 
  "keywords": [
    "training", 
    "Galaxy", 
    "variant analysis", 
    "exome sequencing"
  ], 
  "@context": "https://schema.org/", 
  "distribution": [
    {
      "contentUrl": "https://zenodo.org/api/files/aab7197b-7444-447d-a4b3-f81b2250daf1/family_trio_variants.gemini.sqlite", 
      "encodingFormat": "sqlite", 
      "@type": "DataDownload"
    }
  ], 
  "identifier": "https://doi.org/10.5281/zenodo.3054169", 
  "@id": "https://doi.org/10.5281/zenodo.3054169", 
  "@type": "Dataset", 
  "name": "Training data for 'Exome sequencing data analysis' tutorial (Galaxy Training Material)"
}
12,700
199
views
downloads
All versions This version
Views 12,70012,723
Downloads 199199
Data volume 43.6 GB43.6 GB
Unique views 11,19811,218
Unique downloads 172172

Share

Cite as