May 20, 2019 Dataset Open Access

Maier, Wolfgang

DataCite XML Export

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  <identifier identifierType="DOI">10.5281/zenodo.3054169</identifier>
  <creators>
    <creator>
      <creatorName>Maier, Wolfgang</creatorName>
      <givenName>Wolfgang</givenName>
      <familyName>Maier</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-9464-6640</nameIdentifier>
    </creator>
  </creators>
  <titles>
    <title>Training data for 'Exome sequencing data analysis' tutorial (Galaxy Training Material)</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2019</publicationYear>
  <subjects>
    <subject>training</subject>
    <subject>Galaxy</subject>
    <subject>variant analysis</subject>
    <subject>exome sequencing</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2019-05-20</date>
  </dates>
  <language>en</language>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3054169</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="References">10.5281/zenodo.641031</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3054168</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/galaxy-training</relatedIdentifier>
  </relatedIdentifiers>
  <version>1.0</version>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;The data used in this tutorial are a subset of the data&amp;nbsp;published previously in&amp;nbsp;&lt;a href="https://zenodo.org/record/3243160"&gt;Training material for the course &amp;quot;Exome analysis with GALAXY&amp;quot;&lt;/a&gt;. Credit for uploading the original data goes to&amp;nbsp;Paolo Uva and Gianmauro&amp;nbsp;Cuccuru!&lt;/p&gt;

&lt;p&gt;Specifically, you may need the following datasets for following the tutorial:&lt;/p&gt;

&lt;p&gt;&lt;strong&gt;Raw sequencing reads&lt;/strong&gt;&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/father_R1.fq.gz?download=1"&gt;https://zenodo.org/record/3243160/files/father_R1.fq.gz&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/father_R2.fq.gz?download=1"&gt;https://zenodo.org/record/3243160/files/father_R2.fq.gz&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/mother_R1.fq.gz?download=1"&gt;https://zenodo.org/record/3243160/files/mother_R1.fq.gz&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/mother_R2.fq.gz?download=1"&gt;https://zenodo.org/record/3243160/files/mother_R2.fq.gz&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/proband_R1.fq.gz?download=1"&gt;https://zenodo.org/record/3243160/files/proband_R1.fq.gz&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/proband_R2.fq.gz?download=1"&gt;https://zenodo.org/record/3243160/files/proband_R2.fq.gz&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;&lt;strong&gt;Premapped sequencing reads&lt;/strong&gt;&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/mapped_reads_father.bam?download=1"&gt;https://zenodo.org/record/3243160/files/mapped_reads_father.bam&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/mapped_reads_mother.bam?download=1"&gt;https://zenodo.org/record/3243160/files/mapped_reads_mother.bam&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/mapped_reads_proband.bam?download=1"&gt;https://zenodo.org/record/3243160/files/mapped_reads_proband.bam&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;&lt;strong&gt;Reference sequence (human chromosome 8)&lt;/strong&gt;&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;&lt;a href="https://zenodo.org/record/3243160/files/hg19_chr8.fa.gz?download=1"&gt;https://zenodo.org/record/3243160/files/hg19_chr8.fa.gz&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;&amp;nbsp;&lt;/p&gt;

&lt;p&gt;If you would just like to play with GEMINI rather than work through the full tutorial, you&amp;#39;ll find below a prebuilt GEMINI database (for GEMINI version 0.20.1) for the family trio. You can start exploring this database without having to run GEMINI load&amp;nbsp;and, in fact, without having to install GEMINI&amp;#39;s bundled annotation data.&lt;/p&gt;</description>
  </descriptions>
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