Dataset Open Access

Training data for 'Exome sequencing data analysis' tutorial (Galaxy Training Material)

Maier, Wolfgang


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{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.3054169", 
  "language": "eng", 
  "title": "Training data for 'Exome sequencing data analysis' tutorial (Galaxy Training Material)", 
  "issued": {
    "date-parts": [
      [
        2019, 
        5, 
        20
      ]
    ]
  }, 
  "abstract": "<p>The data used in this tutorial are a subset of the data&nbsp;published previously in&nbsp;<a href=\"https://zenodo.org/record/3243160\">Training material for the course &quot;Exome analysis with GALAXY&quot;</a>. Credit for uploading the original data goes to&nbsp;Paolo Uva and Gianmauro&nbsp;Cuccuru!</p>\n\n<p>Specifically, you may need the following datasets for following the tutorial:</p>\n\n<p><strong>Raw sequencing reads</strong></p>\n\n<ul>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/father_R1.fq.gz?download=1\">https://zenodo.org/record/3243160/files/father_R1.fq.gz</a></li>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/father_R2.fq.gz?download=1\">https://zenodo.org/record/3243160/files/father_R2.fq.gz</a></li>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/mother_R1.fq.gz?download=1\">https://zenodo.org/record/3243160/files/mother_R1.fq.gz</a></li>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/mother_R2.fq.gz?download=1\">https://zenodo.org/record/3243160/files/mother_R2.fq.gz</a></li>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/proband_R1.fq.gz?download=1\">https://zenodo.org/record/3243160/files/proband_R1.fq.gz</a></li>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/proband_R2.fq.gz?download=1\">https://zenodo.org/record/3243160/files/proband_R2.fq.gz</a></li>\n</ul>\n\n<p><strong>Premapped sequencing reads</strong></p>\n\n<ul>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/mapped_reads_father.bam?download=1\">https://zenodo.org/record/3243160/files/mapped_reads_father.bam</a></li>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/mapped_reads_mother.bam?download=1\">https://zenodo.org/record/3243160/files/mapped_reads_mother.bam</a></li>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/mapped_reads_proband.bam?download=1\">https://zenodo.org/record/3243160/files/mapped_reads_proband.bam</a></li>\n</ul>\n\n<p><strong>Reference sequence (human chromosome 8)</strong></p>\n\n<ul>\n\t<li><a href=\"https://zenodo.org/record/3243160/files/hg19_chr8.fa.gz?download=1\">https://zenodo.org/record/3243160/files/hg19_chr8.fa.gz</a></li>\n</ul>\n\n<p>&nbsp;</p>\n\n<p>If you would just like to play with GEMINI rather than work through the full tutorial, you&#39;ll find below a prebuilt GEMINI database (for GEMINI version 0.20.1) for the family trio. You can start exploring this database without having to run GEMINI load&nbsp;and, in fact, without having to install GEMINI&#39;s bundled annotation data.</p>", 
  "author": [
    {
      "family": "Maier, Wolfgang"
    }
  ], 
  "version": "1.0", 
  "type": "dataset", 
  "id": "3054169"
}
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