Dataset Open Access

Host-pathogen protein interactions predicted using structure

Davis, Fred


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<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:creator>Davis, Fred</dc:creator>
  <dc:date>2015-08-26</dc:date>
  <dc:description>This dataset accompanies a manuscript describing a method to predict host-pathogen protein interactions using structure:

Host-pathogen protein interactions predicted by comparative modeling.
Davis FP, Barkan DT, Eswar N, McKerrow JH, Sali A. Protein Sci (2007) 16:2585-2596.
http://www.proteinscience.org/cgi/doi/10.1110/ps.073228407

The files contain predictions made for 10 human pathogens including species of Mycobacterium, Apicomplexa, and Kinetoplastida. The species.all.zip files contain all interactions predictions for each species along with the filter criteria that each interaction passed. The species.filter.zip files contains the same information, but only for the subset of interactions that passed the biological and network-level filters. These files can be viewed in any spreadsheet program, such as Excel.

 

Predictions were made for interactions between human and 


	Mycobacterium tuberculosis: mtuber
	Mycobacterium leprae: mleprae
	Leishmania major: lmajor
	Trypanosoma brucei: tbrucei
	Trypanosoma cruzi: tcruzi
	Cryptosporidium hominis: chominis
	Cryptosporidium parvum: cparvum
	Plasmodium falciparum: pfalciparum
	Plasmodium vivax: pvivax
	Toxoplasma gondii: tgondi
</dc:description>
  <dc:identifier>https://zenodo.org/record/29608</dc:identifier>
  <dc:identifier>10.5281/zenodo.29608</dc:identifier>
  <dc:identifier>oai:zenodo.org:29608</dc:identifier>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>https://opensource.org/licenses/GPL-3.0</dc:rights>
  <dc:subject>protein-protein interactions</dc:subject>
  <dc:subject>host-pathogen interactions</dc:subject>
  <dc:subject>protein structure</dc:subject>
  <dc:title>Host-pathogen protein interactions predicted using structure</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>dataset</dc:type>
</oai_dc:dc>
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