Dataset Open Access

Host-pathogen protein interactions predicted using structure

Davis, Fred

This dataset accompanies a manuscript describing a method to predict host-pathogen protein interactions using structure:

Host-pathogen protein interactions predicted by comparative modeling.
Davis FP, Barkan DT, Eswar N, McKerrow JH, Sali A. Protein Sci (2007) 16:2585-2596.
http://www.proteinscience.org/cgi/doi/10.1110/ps.073228407

The files contain predictions made for 10 human pathogens including species of Mycobacterium, Apicomplexa, and Kinetoplastida. The species.all.zip files contain all interactions predictions for each species along with the filter criteria that each interaction passed. The species.filter.zip files contains the same information, but only for the subset of interactions that passed the biological and network-level filters. These files can be viewed in any spreadsheet program, such as Excel.

 

Predictions were made for interactions between human and 

  1. Mycobacterium tuberculosis: mtuber
  2. Mycobacterium leprae: mleprae
  3. Leishmania major: lmajor
  4. Trypanosoma brucei: tbrucei
  5. Trypanosoma cruzi: tcruzi
  6. Cryptosporidium hominis: chominis
  7. Cryptosporidium parvum: cparvum
  8. Plasmodium falciparum: pfalciparum
  9. Plasmodium vivax: pvivax
  10. Toxoplasma gondii: tgondi

Files (5.6 MB)
Name Size
chominis.all.zip
md5:eab1f2cd5f286666f4e1a94603b133aa
256.7 kB Download
chominis.filter.zip
md5:2f2aaab486fd03aadc5c780b918794cf
3.6 kB Download
cparvum.all.zip
md5:016413a91958ebed131a80ac518022b1
430.9 kB Download
cparvum.filter.zip
md5:94215d925b71aa2b785a5d91bfa71385
6.9 kB Download
lmajor.all.zip
md5:a7bc37696e41eaaf4ddad75fdcfbbdf5
1.2 MB Download
lmajor.filter.zip
md5:a282dd5ecc10ba529bdd3e4e2cbe435f
11.6 kB Download
mleprae.all.zip
md5:c2a816a920a621eda8af90b522cad3ac
47.5 kB Download
mleprae.filter.zip
md5:c509dff7e7c1eb31cba41833ea28abbc
957 Bytes Download
mtuber.all.zip
md5:b584d866365ef7a72694cbcb01ea4339
106.7 kB Download
mtuber.filter.zip
md5:f503b038dbddbf64c3df243e707b8d03
2.8 kB Download
pfalciparum.all.zip
md5:2d6e812b5815729b19aae28ad945fe09
497.2 kB Download
pfalciparum.filter.zip
md5:c71f564b6d5722aa8d5af493294e6855
75.5 kB Download
pvivax.all.zip
md5:d17058e12a83ea47c7015c7c2d9efd76
442.2 kB Download
pvivax.filter.zip
md5:64ab4ab02e524337ec05739f8e4b50d6
625 Bytes Download
tbrucei.all.zip
md5:0f3dbc3854b7cc881adb5d4ec3b1c676
837.2 kB Download
tbrucei.filter.zip
md5:7556a2b02ba58fc0cae3f363aa1cdb74
281 Bytes Download
tcruzi.all.zip
md5:374680e44053445e3f5858ed08c609de
1.4 MB Download
tcruzi.filter.zip
md5:2de85bdf80be1b9c0203db3f4be22337
38.6 kB Download
tgondii.all.zip
md5:6325974025e039a3dcfdaf39a0247176
294.3 kB Download
tgondii.filter.zip
md5:e28ee6350de6a9612f726f3457cb6570
281 Bytes Download

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