Dataset Open Access

CTCF loop analysis and prediction scripts and datasets

Oti, Martin

MARC21 XML Export

<?xml version='1.0' encoding='UTF-8'?>
<record xmlns="">
  <datafield tag="540" ind1=" " ind2=" ">
    <subfield code="u"></subfield>
    <subfield code="a">Creative Commons Zero v1.0 Universal</subfield>
  <datafield tag="260" ind1=" " ind2=" ">
    <subfield code="c">2015-11-30</subfield>
  <controlfield tag="005">20200124192527.0</controlfield>
  <controlfield tag="001">29423</controlfield>
  <datafield tag="909" ind1="C" ind2="O">
    <subfield code="p">openaire_data</subfield>
    <subfield code="o"></subfield>
  <datafield tag="520" ind1=" " ind2=" ">
    <subfield code="a">&lt;p&gt;Additional files accompanying the study of experimental and predicted CTCF loops in human cell lines by Oti et al.&lt;/p&gt;

&lt;p&gt; Scripts used in the analysis of CTCF-mediated loops in human cell lines; both experimental ChIA-PET loops as well as predicted loops based on ChIP-seq data. Zipped file.&lt;/p&gt;

&lt;p&gt;ctcf_predictedloops_ENCODE_chipseq_datasets.tar.gz: Predicted CTCF loops for 100 ENCODE ChIP-seq datasets. Gzipped tar file.&lt;/p&gt;

&lt;p&gt;fimo_ctcfmotifs_MA0139_hg19_2.5e-4.bed.gz: genome-wide CTCF motifs in human genome (hg19) detected by FIMO tool.&lt;/p&gt;</subfield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">70949</subfield>
    <subfield code="z">md5:f7b05b173d2c8150c1f7146810a80b49</subfield>
    <subfield code="u"></subfield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">188323160</subfield>
    <subfield code="z">md5:2f513f46277311099b3885ed5c2b7d9b</subfield>
    <subfield code="u"></subfield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">25642813</subfield>
    <subfield code="z">md5:ad7fe5a5aef9ce9f87170d8502c45b38</subfield>
    <subfield code="u"></subfield>
  <datafield tag="542" ind1=" " ind2=" ">
    <subfield code="l">open</subfield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">dataset</subfield>
  <datafield tag="100" ind1=" " ind2=" ">
    <subfield code="u">Radboud University Nijmegen, The Netherlands</subfield>
    <subfield code="a">Oti, Martin</subfield>
  <datafield tag="024" ind1=" " ind2=" ">
    <subfield code="a">10.5281/zenodo.29423</subfield>
    <subfield code="2">doi</subfield>
  <datafield tag="245" ind1=" " ind2=" ">
    <subfield code="a">CTCF loop analysis and prediction scripts and datasets</subfield>
  <datafield tag="650" ind1="1" ind2="7">
    <subfield code="a">cc-by</subfield>
    <subfield code="2"></subfield>
All versions This version
Views 333333
Downloads 6262
Data volume 4.6 GB4.6 GB
Unique views 306306
Unique downloads 4242


Cite as