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CTCF loop analysis and prediction scripts and datasets

Oti, Martin


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  <identifier identifierType="DOI">10.5281/zenodo.29423</identifier>
  <creators>
    <creator>
      <creatorName>Oti, Martin</creatorName>
      <givenName>Martin</givenName>
      <familyName>Oti</familyName>
      <affiliation>Radboud University Nijmegen, The Netherlands</affiliation>
    </creator>
  </creators>
  <titles>
    <title>CTCF loop analysis and prediction scripts and datasets</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2015</publicationYear>
  <dates>
    <date dateType="Issued">2015-11-30</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/29423</alternateIdentifier>
  </alternateIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/publicdomain/zero/1.0/legalcode">Creative Commons Zero v1.0 Universal</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Additional files accompanying the study of experimental and predicted CTCF loops in human cell lines by Oti et al.&lt;/p&gt;

&lt;p&gt;ctcfloopscripts_v1.0.zip: Scripts used in the analysis of CTCF-mediated loops in human cell lines; both experimental ChIA-PET loops as well as predicted loops based on ChIP-seq data. Zipped file.&lt;/p&gt;

&lt;p&gt;ctcf_predictedloops_ENCODE_chipseq_datasets.tar.gz: Predicted CTCF loops for 100 ENCODE ChIP-seq datasets. Gzipped tar file.&lt;/p&gt;

&lt;p&gt;fimo_ctcfmotifs_MA0139_hg19_2.5e-4.bed.gz: genome-wide CTCF motifs in human genome (hg19) detected by FIMO tool.&lt;/p&gt;</description>
  </descriptions>
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