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CTCF loop analysis and prediction scripts and datasets

Oti, Martin


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    <dct:description>&lt;p&gt;Additional files accompanying the study of experimental and predicted CTCF loops in human cell lines by Oti et al.&lt;/p&gt; &lt;p&gt;ctcfloopscripts_v1.0.zip: Scripts used in the analysis of CTCF-mediated loops in human cell lines; both experimental ChIA-PET loops as well as predicted loops based on ChIP-seq data. Zipped file.&lt;/p&gt; &lt;p&gt;ctcf_predictedloops_ENCODE_chipseq_datasets.tar.gz: Predicted CTCF loops for 100 ENCODE ChIP-seq datasets. Gzipped tar file.&lt;/p&gt; &lt;p&gt;fimo_ctcfmotifs_MA0139_hg19_2.5e-4.bed.gz: genome-wide CTCF motifs in human genome (hg19) detected by FIMO tool.&lt;/p&gt;</dct:description>
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