There is a newer version of this record available.

Software Open Access

Scripts: BAR 1.1.6

Tiago Ferreira; Kota Miura; Bitdeli Chef; Jan Eglinger


MARC21 XML Export

<?xml version='1.0' encoding='UTF-8'?>
<record xmlns="http://www.loc.gov/MARC21/slim">
  <leader>00000nmm##2200000uu#4500</leader>
  <controlfield tag="005">20200125072744.0</controlfield>
  <controlfield tag="001">28838</controlfield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">EMBL</subfield>
    <subfield code="a">Kota Miura</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Bitdeli</subfield>
    <subfield code="a">Bitdeli Chef</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Friedrich Miescher Institute for Biomedical Research</subfield>
    <subfield code="a">Jan Eglinger</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">257144</subfield>
    <subfield code="z">md5:f1394ce8a7b93c4f4686778f2d96091f</subfield>
    <subfield code="u">https://zenodo.org/record/28838/files/Scripts-1.1.6.zip</subfield>
  </datafield>
  <datafield tag="542" ind1=" " ind2=" ">
    <subfield code="l">open</subfield>
  </datafield>
  <datafield tag="260" ind1=" " ind2=" ">
    <subfield code="c">2015-08-21</subfield>
  </datafield>
  <datafield tag="909" ind1="C" ind2="O">
    <subfield code="p">software</subfield>
    <subfield code="o">oai:zenodo.org:28838</subfield>
  </datafield>
  <datafield tag="100" ind1=" " ind2=" ">
    <subfield code="u">McGill University</subfield>
    <subfield code="a">Tiago Ferreira</subfield>
  </datafield>
  <datafield tag="245" ind1=" " ind2=" ">
    <subfield code="a">Scripts: BAR 1.1.6</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">user-zenodo</subfield>
  </datafield>
  <datafield tag="540" ind1=" " ind2=" ">
    <subfield code="a">Other (Open)</subfield>
  </datafield>
  <datafield tag="650" ind1="1" ind2="7">
    <subfield code="a">cc-by</subfield>
    <subfield code="2">opendefinition.org</subfield>
  </datafield>
  <datafield tag="520" ind1=" " ind2=" ">
    <subfield code="a">&lt;ul&gt;
&lt;li&gt;Routines:

&lt;ul&gt;
&lt;li&gt;New script: &lt;a href="./Data_Analysis/README.md#create-boxplot"&gt;Create Boxplot&lt;/a&gt;, a BeanShell script that creates box-and-whisker plots from ImageJ measurements&lt;/li&gt;
&lt;li&gt;
&lt;a href="https://github.com/tferr/Scripts/tree/master/Data_Analysis#plot-results"&gt;Plot Results&lt;/a&gt; has been re-written: It is now a full-fledged interactive plotting GUI&lt;/li&gt;
&lt;li&gt;Updated &lt;a href="https://github.com/tferr/Scripts/tree/master/Tools#roi-manager-tools"&gt;ROI Manager Tools&lt;/a&gt; for IJ 1.45b (The ROI Manager can now store ROIs with the same name).&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;API:

&lt;ul&gt;
&lt;li&gt;New class &lt;a href="./BAR/src/main/java/bar/PlotUtils.java"&gt;PlotUtils&lt;/a&gt; (&lt;a href="http://tferr.github.io/Scripts/apidocs/index.html?bar/PlotUtils.html"&gt;Javadoc&lt;/a&gt;), providing utility methods for plotting operations, including exporting of JFreeChart plots as vector graphics (PDF or SVG)&lt;/li&gt;
&lt;li&gt;Added new methods to the &lt;a href="./BAR/src/main/java/bar/Utils.java"&gt;Utils&lt;/a&gt; class for interacting with the ImageJ Results table (&lt;a href="http://tferr.github.io/Scripts/apidocs/index.html?bar/Utils.html"&gt;Javadoc&lt;/a&gt;)&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;Bug Fixes:

&lt;ul&gt;
&lt;li&gt;Fixed an &lt;a href="https://github.com/imagej/imagej-updater/pull/48"&gt;issue&lt;/a&gt; that did not allow &lt;a href="https://github.com/tferr/Scripts/tree/master/lib#gvy-lib"&gt;Groovy lib&lt;/a&gt; to be recognized by the ImageJ updater&lt;/li&gt;
&lt;li&gt;Fixed an issue in which &lt;a href="https://github.com/tferr/Scripts/tree/master/Data_Analysis#create-boxplot"&gt;Clipboard to Results&lt;/a&gt;  could terminate a calling script&lt;/li&gt;
&lt;li&gt;Fixed an issue (#13) in &lt;a href="https://github.com/tferr/Scripts/tree/master/Tools#roi-manager-tools"&gt;ROI Manager Tools&lt;/a&gt; in which labels were not properly reset&lt;/li&gt;
&lt;li&gt;Suppressed the &amp;quot;Ignoring unsupported output&amp;quot; Consoled warnings triggered by several routines&lt;/li&gt;
&lt;li&gt;Fixed and issue that in which exiting messages  of &lt;a href="./Segmentation/"&gt;Segmentation macros&lt;/a&gt; could not be read in the ImageJ status bar&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;Documentation:

&lt;ul&gt;
&lt;li&gt;Updated &lt;a href="http://tferr.github.io/Scripts/apidocs/"&gt;API&lt;/a&gt;, &lt;a href="https://github.com/tferr/Scripts/#ij-bar"&gt;Markdown&lt;/a&gt;, and &lt;a href="http://fiji.sc/BAR"&gt;User&lt;/a&gt; documentation&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;/ul&gt;</subfield>
  </datafield>
  <datafield tag="773" ind1=" " ind2=" ">
    <subfield code="n">url</subfield>
    <subfield code="i">isSupplementTo</subfield>
    <subfield code="a">https://github.com/tferr/Scripts/tree/1.1.6</subfield>
  </datafield>
  <datafield tag="773" ind1=" " ind2=" ">
    <subfield code="n">doi</subfield>
    <subfield code="i">isVersionOf</subfield>
    <subfield code="a">10.5281/zenodo.597784</subfield>
  </datafield>
  <datafield tag="024" ind1=" " ind2=" ">
    <subfield code="a">10.5281/zenodo.28838</subfield>
    <subfield code="2">doi</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">software</subfield>
  </datafield>
</record>
1,659
137
views
downloads
All versions This version
Views 1,659497
Downloads 13729
Data volume 489.8 MB7.5 MB
Unique views 1,345424
Unique downloads 9626

Share

Cite as