There is a newer version of this record available.

Software Open Access

Scripts: BAR 1.1.6

Tiago Ferreira; Kota Miura; Bitdeli Chef; Jan Eglinger

JSON-LD ( Export

  "description": "<ul>\n<li>Routines:\n\n<ul>\n<li>New script: <a href=\"./Data_Analysis/\">Create Boxplot</a>, a BeanShell script that creates box-and-whisker plots from ImageJ measurements</li>\n<li>\n<a href=\"\">Plot Results</a> has been re-written: It is now a full-fledged interactive plotting GUI</li>\n<li>Updated <a href=\"\">ROI Manager Tools</a> for IJ 1.45b (The ROI Manager can now store ROIs with the same name).</li>\n</ul>\n</li>\n<li>API:\n\n<ul>\n<li>New class <a href=\"./BAR/src/main/java/bar/\">PlotUtils</a> (<a href=\"\">Javadoc</a>), providing utility methods for plotting operations, including exporting of JFreeChart plots as vector graphics (PDF or SVG)</li>\n<li>Added new methods to the <a href=\"./BAR/src/main/java/bar/\">Utils</a> class for interacting with the ImageJ Results table (<a href=\"\">Javadoc</a>)</li>\n</ul>\n</li>\n<li>Bug Fixes:\n\n<ul>\n<li>Fixed an <a href=\"\">issue</a> that did not allow <a href=\"\">Groovy lib</a> to be recognized by the ImageJ updater</li>\n<li>Fixed an issue in which <a href=\"\">Clipboard to Results</a>  could terminate a calling script</li>\n<li>Fixed an issue (#13) in <a href=\"\">ROI Manager Tools</a> in which labels were not properly reset</li>\n<li>Suppressed the &quot;Ignoring unsupported output&quot; Consoled warnings triggered by several routines</li>\n<li>Fixed and issue that in which exiting messages  of <a href=\"./Segmentation/\">Segmentation macros</a> could not be read in the ImageJ status bar</li>\n</ul>\n</li>\n<li>Documentation:\n\n<ul>\n<li>Updated <a href=\"\">API</a>, <a href=\"\">Markdown</a>, and <a href=\"\">User</a> documentation</li>\n</ul>\n</li>\n</ul>", 
  "license": "", 
  "creator": [
      "affiliation": "McGill University", 
      "@type": "Person", 
      "name": "Tiago Ferreira"
      "affiliation": "EMBL", 
      "@type": "Person", 
      "name": "Kota Miura"
      "affiliation": "Bitdeli", 
      "@type": "Person", 
      "name": "Bitdeli Chef"
      "affiliation": "Friedrich Miescher Institute for Biomedical Research", 
      "@type": "Person", 
      "name": "Jan Eglinger"
  "url": "", 
  "codeRepository": "", 
  "datePublished": "2015-08-21", 
  "version": "1.1.6", 
  "@context": "", 
  "identifier": "", 
  "@id": "", 
  "@type": "SoftwareSourceCode", 
  "name": "Scripts: BAR 1.1.6"
All versions This version
Views 1,659497
Downloads 13729
Data volume 489.8 MB7.5 MB
Unique views 1,345424
Unique downloads 9626


Cite as