August 21, 2015 Software Open Access

Tiago Ferreira; Kota Miura; Bitdeli Chef; Jan Eglinger

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    "description": "<ul>\n<li>Routines:\n\n<ul>\n<li>New script: <a href=\"./Data_Analysis/README.md#create-boxplot\">Create Boxplot</a>, a BeanShell script that creates box-and-whisker plots from ImageJ measurements</li>\n<li>\n<a href=\"https://github.com/tferr/Scripts/tree/master/Data_Analysis#plot-results\">Plot Results</a> has been re-written: It is now a full-fledged interactive plotting GUI</li>\n<li>Updated <a href=\"https://github.com/tferr/Scripts/tree/master/Tools#roi-manager-tools\">ROI Manager Tools</a> for IJ 1.45b (The ROI Manager can now store ROIs with the same name).</li>\n</ul>\n</li>\n<li>API:\n\n<ul>\n<li>New class <a href=\"./BAR/src/main/java/bar/PlotUtils.java\">PlotUtils</a> (<a href=\"http://tferr.github.io/Scripts/apidocs/index.html?bar/PlotUtils.html\">Javadoc</a>), providing utility methods for plotting operations, including exporting of JFreeChart plots as vector graphics (PDF or SVG)</li>\n<li>Added new methods to the <a href=\"./BAR/src/main/java/bar/Utils.java\">Utils</a> class for interacting with the ImageJ Results table (<a href=\"http://tferr.github.io/Scripts/apidocs/index.html?bar/Utils.html\">Javadoc</a>)</li>\n</ul>\n</li>\n<li>Bug Fixes:\n\n<ul>\n<li>Fixed an <a href=\"https://github.com/imagej/imagej-updater/pull/48\">issue</a> that did not allow <a href=\"https://github.com/tferr/Scripts/tree/master/lib#gvy-lib\">Groovy lib</a> to be recognized by the ImageJ updater</li>\n<li>Fixed an issue in which <a href=\"https://github.com/tferr/Scripts/tree/master/Data_Analysis#create-boxplot\">Clipboard to Results</a>  could terminate a calling script</li>\n<li>Fixed an issue (#13) in <a href=\"https://github.com/tferr/Scripts/tree/master/Tools#roi-manager-tools\">ROI Manager Tools</a> in which labels were not properly reset</li>\n<li>Suppressed the &quot;Ignoring unsupported output&quot; Consoled warnings triggered by several routines</li>\n<li>Fixed and issue that in which exiting messages  of <a href=\"./Segmentation/\">Segmentation macros</a> could not be read in the ImageJ status bar</li>\n</ul>\n</li>\n<li>Documentation:\n\n<ul>\n<li>Updated <a href=\"http://tferr.github.io/Scripts/apidocs/\">API</a>, <a href=\"https://github.com/tferr/Scripts/#ij-bar\">Markdown</a>, and <a href=\"http://fiji.sc/BAR\">User</a> documentation</li>\n</ul>\n</li>\n</ul>", 
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