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CyREST: REST API App for Cytoscape

Otasek, David; Ono, Keiichiro

CyREST is the Cytoscape core app that powers Cytoscape Automation. It provides a RESTful API to the Cytoscape desktop application and its apps, which enables users to create reproducible workflows executed entirely within Cytoscape or by external tools (e.g., Jupyter, R, GenomeSpace, etc). This enables Cytoscape to scale to large collections of datasets and larger more complex workflows than is practical via keyboard and mouse.

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