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Gene–Tissue relationships from the TISSUES database

Daniel Himmelstein; Lars Juhl Jensen


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    <subfield code="a">&lt;p&gt;We have completed an initial processing of the TISSUES data (repository, notebook). The main output of our analysis is merged.tsv.gz, a table where each row is a tissue (Uberon)--gene (Entrez) pair. For each pair, we provide 5 scores:&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;score_text: score from the text mining channel&lt;/li&gt;
	&lt;li&gt;score_knowledge: score from the UniProtKB/knowledge channel&lt;/li&gt;
	&lt;li&gt;score_experiment: integrated score from the experimental channel&lt;/li&gt;
	&lt;li&gt;score_experiment_unbiased: integrated score from the experimental channel without immunohistochemical staining data from the Human Protein Atlas&lt;/li&gt;
	&lt;li&gt;score_integrated: integrated score combining everything&lt;/li&gt;
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