Software Open Access
Daniel Himmelstein; Lars Juhl Jensen
<?xml version='1.0' encoding='UTF-8'?> <record xmlns="http://www.loc.gov/MARC21/slim"> <leader>00000nmm##2200000uu#4500</leader> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">TISSUES</subfield> </datafield> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">Rephetio</subfield> </datafield> <controlfield tag="005">20200125072532.0</controlfield> <controlfield tag="001">27244</controlfield> <datafield tag="700" ind1=" " ind2=" "> <subfield code="a">Lars Juhl Jensen</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">116230270</subfield> <subfield code="z">md5:b4e3a6cd63ff2463e3b0ddb80af66cef</subfield> <subfield code="u">https://zenodo.org/record/27244/files/tissues-v1.0.zip</subfield> </datafield> <datafield tag="542" ind1=" " ind2=" "> <subfield code="l">open</subfield> </datafield> <datafield tag="260" ind1=" " ind2=" "> <subfield code="c">2015-08-09</subfield> </datafield> <datafield tag="909" ind1="C" ind2="O"> <subfield code="p">software</subfield> <subfield code="o">oai:zenodo.org:27244</subfield> </datafield> <datafield tag="100" ind1=" " ind2=" "> <subfield code="a">Daniel Himmelstein</subfield> </datafield> <datafield tag="245" ind1=" " ind2=" "> <subfield code="a">Gene–Tissue relationships from the TISSUES database</subfield> </datafield> <datafield tag="540" ind1=" " ind2=" "> <subfield code="a">Other (Open)</subfield> </datafield> <datafield tag="650" ind1="1" ind2="7"> <subfield code="a">cc-by</subfield> <subfield code="2">opendefinition.org</subfield> </datafield> <datafield tag="520" ind1=" " ind2=" "> <subfield code="a"><p>We have completed an initial processing of the TISSUES data (repository, notebook). The main output of our analysis is merged.tsv.gz, a table where each row is a tissue (Uberon)--gene (Entrez) pair. For each pair, we provide 5 scores:</p> <ul> <li>score_text: score from the text mining channel</li> <li>score_knowledge: score from the UniProtKB/knowledge channel</li> <li>score_experiment: integrated score from the experimental channel</li> <li>score_experiment_unbiased: integrated score from the experimental channel without immunohistochemical staining data from the Human Protein Atlas</li> <li>score_integrated: integrated score combining everything</li> </ul></subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">url</subfield> <subfield code="i">isSupplementTo</subfield> <subfield code="a">https://github.com/dhimmel/tissues/tree/v1.0</subfield> </datafield> <datafield tag="024" ind1=" " ind2=" "> <subfield code="a">10.5281/zenodo.27244</subfield> <subfield code="2">doi</subfield> </datafield> <datafield tag="980" ind1=" " ind2=" "> <subfield code="a">software</subfield> </datafield> </record>
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