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Gene–Tissue relationships from the TISSUES database

Daniel Himmelstein; Lars Juhl Jensen


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  <identifier identifierType="DOI">10.5281/zenodo.27244</identifier>
  <creators>
    <creator>
      <creatorName>Daniel Himmelstein</creatorName>
    </creator>
    <creator>
      <creatorName>Lars Juhl Jensen</creatorName>
    </creator>
  </creators>
  <titles>
    <title>Gene–Tissue relationships from the TISSUES database</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2015</publicationYear>
  <subjects>
    <subject>TISSUES</subject>
    <subject>Rephetio</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2015-08-09</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/27244</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/dhimmel/tissues/tree/v1.0</relatedIdentifier>
  </relatedIdentifiers>
  <version>v1.0</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;We have completed an initial processing of the TISSUES data (repository, notebook). The main output of our analysis is merged.tsv.gz, a table where each row is a tissue (Uberon)--gene (Entrez) pair. For each pair, we provide 5 scores:&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;score_text: score from the text mining channel&lt;/li&gt;
	&lt;li&gt;score_knowledge: score from the UniProtKB/knowledge channel&lt;/li&gt;
	&lt;li&gt;score_experiment: integrated score from the experimental channel&lt;/li&gt;
	&lt;li&gt;score_experiment_unbiased: integrated score from the experimental channel without immunohistochemical staining data from the Human Protein Atlas&lt;/li&gt;
	&lt;li&gt;score_integrated: integrated score combining everything&lt;/li&gt;
&lt;/ul&gt;</description>
  </descriptions>
</resource>
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