Software Open Access

GMOD/Apollo: Apollo2.0.6(JB#29795a1bbb)

Nathan Dunn; Monica Munoz-Torres; Deepak Unni; Eric Y; Eric Rasche; Anthony Bretaudeau; Colin Diesh; Christine Elsik; Ian Holmes; Suzanna Lewis


MARC21 XML Export

<?xml version='1.0' encoding='UTF-8'?>
<record xmlns="http://www.loc.gov/MARC21/slim">
  <leader>00000nmm##2200000uu#4500</leader>
  <datafield tag="540" ind1=" " ind2=" ">
    <subfield code="a">Other (Open)</subfield>
  </datafield>
  <datafield tag="260" ind1=" " ind2=" ">
    <subfield code="c">2017-02-03</subfield>
  </datafield>
  <controlfield tag="005">20170217232116.0</controlfield>
  <datafield tag="773" ind1=" " ind2=" ">
    <subfield code="n">url</subfield>
    <subfield code="i">isSupplementTo</subfield>
    <subfield code="a">https://github.com/GMOD/Apollo/tree/2.0.6</subfield>
  </datafield>
  <controlfield tag="001">268535</controlfield>
  <datafield tag="909" ind1="C" ind2="O">
    <subfield code="p">software</subfield>
    <subfield code="o">oai:zenodo.org:268535</subfield>
  </datafield>
  <datafield tag="520" ind1=" " ind2=" ">
    <subfield code="a">&lt;p&gt;Apollo 2.0.6 &lt;strong&gt;Official Release&lt;/strong&gt;&lt;/p&gt;

&lt;p&gt;Some of the new features include:&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;Numerous UI and performance improvements, including a new icon (button) on the Annotator Panel to toggle the display of JBrowse native tracks.&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;Some important bug fixes:&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;Transcripts of pseudogenes should NOT have the word 'transcript' or other type in the name.&lt;/li&gt;
	&lt;li&gt;Problems loading list of Tracks when switching organisms on slower connections.&lt;/li&gt;
	&lt;li&gt;Fixed naming of transcripts under various scenarios.&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;The complete change log can be found at: https://github.com/GMOD/Apollo/blob/master/ChangeLog.md&lt;/p&gt;

&lt;p&gt;Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/stable/&lt;/p&gt;

&lt;p&gt;Note: You can find a guide upgrading existing Apollo installations here: http://genomearchitect.readthedocs.io/en/stable/Migration.html&lt;/p&gt;

&lt;p&gt;Please open a GitHub issue if you find any problems: https://github.com/GMOD/Apollo/issues/&lt;/p&gt;

&lt;p&gt;Active mailing list (apollo@lists.lbl.gov) and archive.&lt;/p&gt;</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Lawrence Berkeley National Laboratory</subfield>
    <subfield code="a">Monica Munoz-Torres</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of Missouri</subfield>
    <subfield code="a">Deepak Unni</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">UC Berkeley</subfield>
    <subfield code="a">Eric Y</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Texas A &amp; M University - Center for Phage Technology</subfield>
    <subfield code="a">Eric Rasche</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">BIPAA/GenOuest</subfield>
    <subfield code="a">Anthony Bretaudeau</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of Michigan</subfield>
    <subfield code="a">Colin Diesh</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of Missouri</subfield>
    <subfield code="a">Christine Elsik</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of California, Berkeley</subfield>
    <subfield code="a">Ian Holmes</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Lawrence Berkeley National Laboratory</subfield>
    <subfield code="a">Suzanna Lewis</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">87511549</subfield>
    <subfield code="z">md5:51bee4b35021aa0c774cd5361f7976d8</subfield>
    <subfield code="u">https://zenodo.org/record/268535/files/GMOD/Apollo-2.0.6.zip</subfield>
  </datafield>
  <datafield tag="542" ind1=" " ind2=" ">
    <subfield code="l">open</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">software</subfield>
  </datafield>
  <datafield tag="100" ind1=" " ind2=" ">
    <subfield code="u">Lawrence Berkeley National Laboratory</subfield>
    <subfield code="a">Nathan Dunn</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">biocuration</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">genome annotation</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">GMOD</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">collaboration software</subfield>
  </datafield>
  <datafield tag="024" ind1=" " ind2=" ">
    <subfield code="a">10.5281/zenodo.268535</subfield>
    <subfield code="2">doi</subfield>
  </datafield>
  <datafield tag="245" ind1=" " ind2=" ">
    <subfield code="a">GMOD/Apollo: Apollo2.0.6(JB#29795a1bbb)</subfield>
  </datafield>
  <datafield tag="650" ind1="1" ind2="7">
    <subfield code="a">cc-by</subfield>
    <subfield code="2">opendefinition.org</subfield>
  </datafield>
</record>

Share

Cite as