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GMOD/Apollo: Apollo2.0.6(JB#29795a1bbb)

Nathan Dunn; Monica Munoz-Torres; Deepak Unni; Eric Y; Eric Rasche; Anthony Bretaudeau; Colin Diesh; Christine Elsik; Ian Holmes; Suzanna Lewis


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  <identifier identifierType="DOI">10.5281/zenodo.268535</identifier>
  <creators>
    <creator>
      <creatorName>Nathan Dunn</creatorName>
      <affiliation>Lawrence Berkeley National Laboratory</affiliation>
    </creator>
    <creator>
      <creatorName>Monica Munoz-Torres</creatorName>
      <affiliation>Lawrence Berkeley National Laboratory</affiliation>
    </creator>
    <creator>
      <creatorName>Deepak Unni</creatorName>
      <affiliation>University of Missouri</affiliation>
    </creator>
    <creator>
      <creatorName>Eric Y</creatorName>
      <affiliation>UC Berkeley</affiliation>
    </creator>
    <creator>
      <creatorName>Eric Rasche</creatorName>
      <affiliation>Texas A &amp; M University - Center for Phage Technology</affiliation>
    </creator>
    <creator>
      <creatorName>Anthony Bretaudeau</creatorName>
      <affiliation>BIPAA/GenOuest</affiliation>
    </creator>
    <creator>
      <creatorName>Colin Diesh</creatorName>
      <affiliation>University of Michigan</affiliation>
    </creator>
    <creator>
      <creatorName>Christine Elsik</creatorName>
      <affiliation>University of Missouri</affiliation>
    </creator>
    <creator>
      <creatorName>Ian Holmes</creatorName>
      <affiliation>University of California, Berkeley</affiliation>
    </creator>
    <creator>
      <creatorName>Suzanna Lewis</creatorName>
      <affiliation>Lawrence Berkeley National Laboratory</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Gmod/Apollo: Apollo2.0.6(Jb#29795A1Bbb)</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2017</publicationYear>
  <subjects>
    <subject>biocuration</subject>
    <subject>genome annotation</subject>
    <subject>GMOD</subject>
    <subject>collaboration software</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2017-02-03</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/268535</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/GMOD/Apollo/tree/2.0.6</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsPartOf">10.5281/zenodo.598056</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Apollo 2.0.6 &lt;strong&gt;Official Release&lt;/strong&gt;&lt;/p&gt;

&lt;p&gt;Some of the new features include:&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;Numerous UI and performance improvements, including a new icon (button) on the Annotator Panel to toggle the display of JBrowse native tracks.&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;Some important bug fixes:&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;Transcripts of pseudogenes should NOT have the word 'transcript' or other type in the name.&lt;/li&gt;
	&lt;li&gt;Problems loading list of Tracks when switching organisms on slower connections.&lt;/li&gt;
	&lt;li&gt;Fixed naming of transcripts under various scenarios.&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;The complete change log can be found at: https://github.com/GMOD/Apollo/blob/master/ChangeLog.md&lt;/p&gt;

&lt;p&gt;Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/stable/&lt;/p&gt;

&lt;p&gt;Note: You can find a guide upgrading existing Apollo installations here: http://genomearchitect.readthedocs.io/en/stable/Migration.html&lt;/p&gt;

&lt;p&gt;Please open a GitHub issue if you find any problems: https://github.com/GMOD/Apollo/issues/&lt;/p&gt;

&lt;p&gt;Active mailing list (apollo@lists.lbl.gov) and archive.&lt;/p&gt;</description>
  </descriptions>
</resource>

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