Dataset Open Access
Chee Huat (Linus) Eng; Long Cai
<?xml version='1.0' encoding='UTF-8'?> <record xmlns="http://www.loc.gov/MARC21/slim"> <leader>00000nmm##2200000uu#4500</leader> <datafield tag="999" ind1="C" ind2="5"> <subfield code="x">Eng, C.-H. L. et al. Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH+. Nature 568, 235–239 (2019)</subfield> </datafield> <controlfield tag="005">20200124192528.0</controlfield> <controlfield tag="001">2669683</controlfield> <datafield tag="700" ind1=" " ind2=" "> <subfield code="u">California Institute of Technology</subfield> <subfield code="a">Long Cai</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">267038823</subfield> <subfield code="z">md5:2ab21edfa5788a717829d94656393524</subfield> <subfield code="u">https://zenodo.org/record/2669683/files/DAPI_experiment1.zip</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">369444673</subfield> <subfield code="z">md5:77a5b6cc17049b2e086bc8c5375ebc0d</subfield> <subfield code="u">https://zenodo.org/record/2669683/files/DAPI_experiment2.zip</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">154821</subfield> <subfield code="z">md5:75b7b62c79014fc7e171a692beb129b8</subfield> <subfield code="u">https://zenodo.org/record/2669683/files/ROIs_Experiment1_NIH3T3.zip</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">135240</subfield> <subfield code="z">md5:66dc9f6c6f2e9c5478eb64e54e7bce87</subfield> <subfield code="u">https://zenodo.org/record/2669683/files/ROIs_Experiment2_NIH3T3.zip</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">135426738</subfield> <subfield code="z">md5:a228f8e6f64b0506ce072a5e6d469038</subfield> <subfield code="u">https://zenodo.org/record/2669683/files/seqFISH+_NIH3T3_point_locations.zip</subfield> </datafield> <datafield tag="542" ind1=" " ind2=" "> <subfield code="l">open</subfield> </datafield> <datafield tag="260" ind1=" " ind2=" "> <subfield code="c">2019-05-06</subfield> </datafield> <datafield tag="909" ind1="C" ind2="O"> <subfield code="p">openaire_data</subfield> <subfield code="o">oai:zenodo.org:2669683</subfield> </datafield> <datafield tag="909" ind1="C" ind2="4"> <subfield code="p">Nature</subfield> </datafield> <datafield tag="100" ind1=" " ind2=" "> <subfield code="u">California Institute of Technology</subfield> <subfield code="a">Chee Huat (Linus) Eng</subfield> </datafield> <datafield tag="245" ind1=" " ind2=" "> <subfield code="a">NIH3T3_point_locations for RNA seqFISH+ experiments</subfield> </datafield> <datafield tag="540" ind1=" " ind2=" "> <subfield code="u">https://creativecommons.org/licenses/by/4.0/legalcode</subfield> <subfield code="a">Creative Commons Attribution 4.0 International</subfield> </datafield> <datafield tag="650" ind1="1" ind2="7"> <subfield code="a">cc-by</subfield> <subfield code="2">opendefinition.org</subfield> </datafield> <datafield tag="520" ind1=" " ind2=" "> <subfield code="a"><p>These source data consist of the point locations of individual decoded mRNA dots in seqFISH+ experiments on NIH/3T3 cells. DAPI_experiment folder contains the DAPI stainings with other beads images. ROIs_experiment folders are the manual segmentation performed in ImageJ. We only performed segmentation on the whole single cells. In seqFISH+_NIH3T3_point_locations zip folder, there are 3 matlab files .&nbsp;One is gene name file, the other two files are point locations for replicate 1 and 2 seqFISH+ experiments in&nbsp;NIH/3T3 cells. The columns of the data represent field of view(FOV), Cell , and Gene. For example :&nbsp;FOV1 , Cell 5, Gene : Bgn to retrieve the point locations.&nbsp;</p></subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">isVersionOf</subfield> <subfield code="a">10.5281/zenodo.2669682</subfield> </datafield> <datafield tag="024" ind1=" " ind2=" "> <subfield code="a">10.5281/zenodo.2669683</subfield> <subfield code="2">doi</subfield> </datafield> <datafield tag="980" ind1=" " ind2=" "> <subfield code="a">dataset</subfield> </datafield> </record>
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