UPDATE: Zenodo migration postponed to Oct 13 from 06:00-08:00 UTC. Read the announcement.

Dataset Open Access

NIH3T3_point_locations for RNA seqFISH+ experiments

Chee Huat (Linus) Eng; Long Cai


MARC21 XML Export

<?xml version='1.0' encoding='UTF-8'?>
<record xmlns="http://www.loc.gov/MARC21/slim">
  <leader>00000nmm##2200000uu#4500</leader>
  <datafield tag="999" ind1="C" ind2="5">
    <subfield code="x">Eng, C.-H. L. et al. Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH+. Nature 568, 235–239 (2019)</subfield>
  </datafield>
  <controlfield tag="005">20200124192528.0</controlfield>
  <controlfield tag="001">2669683</controlfield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">California Institute of Technology</subfield>
    <subfield code="a">Long Cai</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">267038823</subfield>
    <subfield code="z">md5:2ab21edfa5788a717829d94656393524</subfield>
    <subfield code="u">https://zenodo.org/record/2669683/files/DAPI_experiment1.zip</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">369444673</subfield>
    <subfield code="z">md5:77a5b6cc17049b2e086bc8c5375ebc0d</subfield>
    <subfield code="u">https://zenodo.org/record/2669683/files/DAPI_experiment2.zip</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">154821</subfield>
    <subfield code="z">md5:75b7b62c79014fc7e171a692beb129b8</subfield>
    <subfield code="u">https://zenodo.org/record/2669683/files/ROIs_Experiment1_NIH3T3.zip</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">135240</subfield>
    <subfield code="z">md5:66dc9f6c6f2e9c5478eb64e54e7bce87</subfield>
    <subfield code="u">https://zenodo.org/record/2669683/files/ROIs_Experiment2_NIH3T3.zip</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">135426738</subfield>
    <subfield code="z">md5:a228f8e6f64b0506ce072a5e6d469038</subfield>
    <subfield code="u">https://zenodo.org/record/2669683/files/seqFISH+_NIH3T3_point_locations.zip</subfield>
  </datafield>
  <datafield tag="542" ind1=" " ind2=" ">
    <subfield code="l">open</subfield>
  </datafield>
  <datafield tag="260" ind1=" " ind2=" ">
    <subfield code="c">2019-05-06</subfield>
  </datafield>
  <datafield tag="909" ind1="C" ind2="O">
    <subfield code="p">openaire_data</subfield>
    <subfield code="o">oai:zenodo.org:2669683</subfield>
  </datafield>
  <datafield tag="909" ind1="C" ind2="4">
    <subfield code="p">Nature</subfield>
  </datafield>
  <datafield tag="100" ind1=" " ind2=" ">
    <subfield code="u">California Institute of Technology</subfield>
    <subfield code="a">Chee Huat (Linus) Eng</subfield>
  </datafield>
  <datafield tag="245" ind1=" " ind2=" ">
    <subfield code="a">NIH3T3_point_locations for RNA seqFISH+ experiments</subfield>
  </datafield>
  <datafield tag="540" ind1=" " ind2=" ">
    <subfield code="u">https://creativecommons.org/licenses/by/4.0/legalcode</subfield>
    <subfield code="a">Creative Commons Attribution 4.0 International</subfield>
  </datafield>
  <datafield tag="650" ind1="1" ind2="7">
    <subfield code="a">cc-by</subfield>
    <subfield code="2">opendefinition.org</subfield>
  </datafield>
  <datafield tag="520" ind1=" " ind2=" ">
    <subfield code="a">&lt;p&gt;These source data consist of the point locations of individual decoded mRNA dots in seqFISH+ experiments on NIH/3T3 cells. DAPI_experiment folder contains the DAPI stainings with other beads images. ROIs_experiment folders are the manual segmentation performed in ImageJ. We only performed segmentation on the whole single cells. In seqFISH+_NIH3T3_point_locations zip folder, there are 3 matlab files .&amp;nbsp;One is gene name file, the other two files are point locations for replicate 1 and 2 seqFISH+ experiments in&amp;nbsp;NIH/3T3 cells. The columns of the data represent field of view(FOV), Cell , and Gene. For example :&amp;nbsp;FOV1 , Cell 5, Gene : Bgn to retrieve the point locations.&amp;nbsp;&lt;/p&gt;</subfield>
  </datafield>
  <datafield tag="773" ind1=" " ind2=" ">
    <subfield code="n">doi</subfield>
    <subfield code="i">isVersionOf</subfield>
    <subfield code="a">10.5281/zenodo.2669682</subfield>
  </datafield>
  <datafield tag="024" ind1=" " ind2=" ">
    <subfield code="a">10.5281/zenodo.2669683</subfield>
    <subfield code="2">doi</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">dataset</subfield>
  </datafield>
</record>
4,348
2,475
views
downloads
All versions This version
Views 4,3484,356
Downloads 2,4752,475
Data volume 463.3 GB463.3 GB
Unique views 3,9073,913
Unique downloads 1,0371,037

Share

Cite as