Kuzniar, Arnold
Santuari, Luca
2019-05-03
<p>This distribution contains data analyzed by the <a href="https://doi.org/10.5281/zenodo.1217111">sv-callers</a> workflow (v1.1.0). It includes sequence files in FASTA, ENCODE regions in BED, detected structural variants (SVs) in VCF, workflow config files and Jupyter Notebook with R code that compares the SV call sets and generates figures (Venn & UpSet diagrams). Large BAMs including index files were excluded due to max. upload file size, however, these files are freely available from the NCBI FTP server and the ENA database (see README files).</p>
https://doi.org/10.5281/zenodo.2663308
oai:zenodo.org:2663308
eng
Zenodo
https://doi.org/10.5281/zenodo.1217111
https://zenodo.org/communities/nlesc
https://doi.org/10.5281/zenodo.2663307
info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
genomics
human genome
structural variants
SV calling
germline
somatic
cell lines
benchmark
Genome in a Bottle
Test data for sv-callers workflow
info:eu-repo/semantics/other