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Published April 6, 2019 | Version 1.0.1
Software Open

nf-core/rnafusion: nf-core/rnafusion:1.0.1

Creators

  • 1. @novicell
  • 2. Science for Life Laboratory
  • 3. @SciLifeLab | Karolinska Institutet
  • 4. SciLifeLab
  • 5. Karolinska Institutet | Science for Life Laboratory

Description

nfcore/rnafusion version 1.0.1 - 2018/04/06 Added

  • Added support for extra parameters for tools STAR-Fusion, FusionCatcher and fusion-report
  • Added example configuration for singularity and docker
  • Added fusion-report into the stack #62, #55, #53, #51
  • Added nextflow helper script download-singularity-img.nf
  • Added nextflow helper script download-references.nf
  • Added Jenkinsfile for in-house testing
Changed
  • Updated installation of FusionCatcher (available now on bioconda)
Fixed
  • Fixed empty symlinks (input.X) in fusion-report #68
  • Fixed FASTA issues #60
  • Fixed centralized nf-core/config #64
  • Fixed scrape_software_versions.py to parse tools versions correctly #65
Removed
  • Removed Singularity

Files

nf-core/rnafusion-1.0.1.zip

Files (417.9 kB)

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md5:3f9aa8aa254de20060cbf06f9461839c
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Additional details

Related works

Is supplement to
https://github.com/nf-core/rnafusion/tree/1.0.1 (URL)