Phil Ewels
Rickard Hammarén
Alexander Peltzer
Denis Moreno
rfenouil
Maxime Garcia
Senthilkumar Panneerselvam
marchoeppner
Sven F.
jun-wan
Johannes Alneberg
aanil
Sofia Haglund
Paolo Di Tommaso
Anders Jemt
KochTobi
Lavanya Veeravalli
Colin Davenport
Rad Suchecki
Max Natthawut Adulyanukosol
Francesco
Denis OMeally
Chuan Wang
2019-03-26
Pipeline Updates
<ul>
<li>Added configurable options to specify group attributes for featureCounts <a href="https://github.com/nf-core/rnaseq/issues/144">#144</a></li>
<li>Added support for RSeqC 3.0 <a href="https://github.com/nf-core/rnaseq/issues/148">#148</a></li>
<li>Added a <code>parameters.settings.json</code> file for use with the new <code>nf-core launch</code> helper tool.</li>
<li>Centralized all configuration profiles using <a href="https://github.com/nf-core/configs">nf-core/configs</a></li>
<li>Fixed all centralized configs <a href="https://github.com/nf-core/rnaseq/issues/163">for offline usage</a></li>
<li>Hide %dup in <a href="https://github.com/nf-core/rnaseq/issues/150">multiqc report</a></li>
</ul>
Bug fixes
<ul>
<li>Fixing HISAT2 Index Building for large reference genomes <a href="https://github.com/nf-core/rnaseq/issues/153">#153</a></li>
<li>Fixing HISAT2 BAM sorting using more memory than available on the system</li>
<li>Fixing MarkDuplicates memory consumption issues following <a href="https://github.com/nf-core/rnaseq/pull/179">#179</a></li>
</ul>
Dependency Updates
<ul>
<li>RSeQC 2.6.4 -> 3.0.0</li>
<li>Picard 2.18.15 -> 2.18.23</li>
<li>r-data.table 1.11.4 -> 1.12.0</li>
<li>r-markdown 0.8 -> 0.9</li>
<li>csvtk 0.15.0 -> 0.17.0</li>
<li>stringtie 1.3.4 -> 1.3.5</li>
<li>subread 1.6.2 -> 1.6.4</li>
<li>gffread 0.9.9 -> 0.9.12</li>
<li>multiqc 1.6 -> 1.7</li>
</ul>
https://doi.org/10.5281/zenodo.2610144
oai:zenodo.org:2610144
Zenodo
https://github.com/nf-core/rnaseq/tree/1.3
https://doi.org/10.5281/zenodo.1400710
info:eu-repo/semantics/openAccess
Other (Open)
nf-core/rnaseq: nf-core/rnaseq version 1.3
info:eu-repo/semantics/other