Published March 26, 2019
| Version 1.3
Software
Open
nf-core/rnaseq: nf-core/rnaseq version 1.3
Creators
- Phil Ewels1
- Rickard Hammarén
- Alexander Peltzer2
- Denis Moreno3
- rfenouil
- Maxime Garcia4
- Senthilkumar Panneerselvam5
- marchoeppner
- Sven F.6
- jun-wan
- Johannes Alneberg7
- aanil
- Sofia Haglund4
- Paolo Di Tommaso8
- Anders Jemt
- KochTobi
- Lavanya Veeravalli9
- Colin Davenport
- Rad Suchecki
- Max Natthawut Adulyanukosol
- Francesco
- Denis OMeally
- Chuan Wang10
- 1. Science for Life Laboratory
- 2. @qbicsoftware
- 3. Inivata
- 4. @SciLifeLab | Karolinska Institutet
- 5. @NationalGenomicsInfrastructure @SciLifeLab
- 6. QBiC @qbicsoftware
- 7. National Genomics Infrastructure
- 8. Comparative Bioinformatics, CRG
- 9. Genome Institute of Singapore
- 10. National Genomics Infrastructure, Science for Life Laboratory
Description
Pipeline Updates
- Added configurable options to specify group attributes for featureCounts #144
- Added support for RSeqC 3.0 #148
- Added a
parameters.settings.jsonfile for use with the newnf-core launchhelper tool. - Centralized all configuration profiles using nf-core/configs
- Fixed all centralized configs for offline usage
- Hide %dup in multiqc report
- Fixing HISAT2 Index Building for large reference genomes #153
- Fixing HISAT2 BAM sorting using more memory than available on the system
- Fixing MarkDuplicates memory consumption issues following #179
- RSeQC 2.6.4 -> 3.0.0
- Picard 2.18.15 -> 2.18.23
- r-data.table 1.11.4 -> 1.12.0
- r-markdown 0.8 -> 0.9
- csvtk 0.15.0 -> 0.17.0
- stringtie 1.3.4 -> 1.3.5
- subread 1.6.2 -> 1.6.4
- gffread 0.9.9 -> 0.9.12
- multiqc 1.6 -> 1.7
Files
nf-core/rnaseq-1.3.zip
Files
(4.0 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:380d2deaa6fa46dec2e326867e94a5c7
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4.0 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/nf-core/rnaseq/tree/1.3 (URL)