Preview

ReproducibleCode
- AdvancedModel_WeightInteractsSex
  - Analysis_WeightInteractionTerm.R
    
    6.9 kB
  - FETFramework.R
    
    9.7 kB
  - LogisticFramework.R
    
    24.0 kB
  - MMFramework.R
    
    54.1 kB
  - MMFrameworkAssessSD.R
    
    42.2 kB
  - PhenList.R
    
    23.2 kB
  - PhenTestResult.R
    
    2.7 kB
  - README.docx
    
    20.1 kB
  - RRFramework.R
    
    28.5 kB
  - SD-cont-sex-weight-report-1474904013678.tsv
    
    187.3 MB
  - TFFramework.R
    
    43.5 kB
  - classes.R
    
    31.9 kB
  - classificationSD.R
    
    8.2 kB
  - diagnostictest.R
    
    4.9 kB
  - graphsDataset.R
    
    21.3 kB
  - graphsResults.R
    
    20.2 kB
  - summaryOutput.R
    
    13.6 kB
  - testDataset.R
    
    29.1 kB
  - transformation.R
    
    8.8 kB
  - vectorOutput.R
    
    23.3 kB
  - vectorOutputSD.R
    
    22.2 kB
- Calculating consistency of sex effect in control data across institutes
  - README.docx
    
    15.0 kB
  - ReproducibilityWithinControlData.R
    
    6.4 kB
- Figure 8 and Supplementary Table 1
  - Figure_AtGeneLevel.R
    
    17.3 kB
  - README.docx
    
    16.6 kB
  - SDofGenotypeEffect_processedData_continuous.csv
    
    119.3 MB
  - SDofGenotypeEffect_processedData_continuous.zip
    
    33.2 MB
  - SummaryCallsAtGeneLevel.csv
    
    305.3 kB
  - Usp47_BMC.csv
    
    159.3 kB
  - Usp47_HDL.csv
    
    410.3 kB
  - Usp47_fastedglucose.csv
    
    394.6 kB
  - ~$README.docx
    
    162 Bytes
- Figure 1
  - 20160224-SD-in-controls.tsv
    
    541.1 kB
  - AssessingRoleOfSex.R
    
    9.1 kB
  - README.docx
    
    16.5 kB
  - SexRoleInControlData.R
    
    5.0 kB
  - roleSexWildtypeData.csv
    
    519.2 kB
- Figure 2
  - README.docx
    
    16.6 kB
  - SD in wildtype data -without Weight.R
    
    11.1 kB
  - SD-direct-1465833965753.tsv
    
    341.4 kB
  - SexImpact-WithoutWeightAdjustment.R
    
    9.1 kB
- Figure 3
  - 20160224-SD-in-controls.tsv
    
    541.1 kB
  - Figure3.R
    
    11.9 kB
  - README.docx
    
    15.6 kB
- Figure 4
  - 20160229-SD-cont-report-1456575658973.tsv
    
    188.1 MB
  - 20160325-SD-cat-report-1458835534755.tsv
    
    160.5 MB
  - Cat_GenotypeSDeffect.R
    
    19.6 kB
  - FETFramework.R
    
    9.7 kB
  - Figure2a.tiff
    
    57.6 MB
  - LogisticFramework.R
    
    24.0 kB
  - MMFramework.R
    
    54.1 kB
  - MMFrameworkAssessSD.R
    
    42.0 kB
  - PhenList.R
    
    23.2 kB
  - PhenTestResult.R
    
    2.7 kB
  - README.docx
    
    22.1 kB
  - RRFramework.R
    
    28.5 kB
  - SD-cont-sex-weight-report-1474920395749.tsv
    
    187.7 MB
  - SD-cont-sex-weight-report-1474931846961.tsv
    
    187.7 MB
  - SDofGenotypeEffect_processedData_categorical.csv
    
    173.2 MB
  - SDofGenotypeEffect_processedData_continuous.csv
    
    119.3 MB
  - SexRoleInModifyingGenotypeEffect.R
    
    23.0 kB
  - SupplementaryTable2.csv
    
    3.5 kB
  - SupplementaryTable3.csv
    
    313 Bytes
  - TFFramework.R
    
    43.5 kB
  - classes.R
    
    31.9 kB
  - classificationSD.R
    
    8.2 kB
  - diagnostictest.R
    
    4.9 kB
  - graphsDataset.R
    
    21.3 kB
  - graphsResults.R
    
    20.2 kB
  - summaryOutput.R
    
    13.6 kB
  - testDataset.R
    
    29.1 kB
  - transformation.R
    
    8.8 kB
  - vectorOutput.R
    
    23.3 kB
  - vectorOutputSD.R
    
    22.2 kB
- Figure 5
  - 20160229-SD-cont-report-1456575658973.tsv
    
    188.1 MB
  - Call_behaviour_alternate_settings.R
    
    10.2 kB
  - README.docx
    
    13.0 kB
- Figure 6
  - CC_MouseGP_B6N_WT.csv
    
    591.7 kB
  - DEXA_MouseGP_B6N_WT.csv
    
    309.8 kB
  - FACS_2panel_B6N_WT.csv
    
    364.4 kB
  - FPR_SDv2_2Batch.R
    
    8.1 kB
  - FPR_SDv2_2Batch_Wrapper.R
    
    553 Bytes
  - FPR_SDv2_3Batch.R
    
    8.5 kB
  - FPR_SDv2_3Batch_Wrapper.R
    
    555 Bytes
  - FPR_SDv2_MultiGroup.R
    
    8.6 kB
  - FPR_SDv2_MultiGroup_Wrapper.R
    
    588 Bytes
  - FPR_SDv2_OneBatch.R
    
    7.9 kB
  - FPR_SDv2_OneBatch_Wrapper.R
    
    559 Bytes
  - FPR_SDv2_Random.R
    
    7.1 kB
  - FPR_SDv2_Random_Wrapper.R
    
    580 Bytes
  - FPR_under_null.R
    
    10.5 kB
  - HAEM_MouseGP_B6N_WT.csv
    
    394.4 kB
  - OF_MouseGP_B6JandN_WT.csv
    
    707.2 kB
  - README.docx
    
    17.8 kB
  - SD_directAssessmentRun1_outputExploration.R
    
    23.0 kB
  - SDdirectAssessmentv1_2BatchOutput.csv
    
    3.6 MB
  - SDdirectAssessmentv1_3BatchOutput.csv
    
    3.9 MB
  - SDdirectAssessmentv1_MultiGroupOutputv2.csv
    
    45.3 MB
  - SDdirectAssessmentv1_OBatchOutput.csv
    
    2.8 MB
  - SDdirectAssessmentv1_RandomOutputv2.csv
    
    45.2 MB
  - SDv2_PhenStat_scripts_concat.R
    
    403.4 kB
- Figure 7
  - CC_MouseGP_B6N_WT.csv
    
    474.7 kB
  - ConstructionData.R
    
    3.8 kB
  - FPR stage 2 in presence of genotype effect .R
    
    4.9 kB
  - FPRResamplingWithGenotypeEffect.R
    
    8.7 kB
  - FPRStage2WithMainEffectMultiBatchWorkflow.csv
    
    25.9 MB
  - FPR_Stage2PresenceGenotypeEffect_MultiGroup_Wrapper.R
    
    730 Bytes
  - README.docx
    
    17.1 kB
  - SDv2_PhenStat_scripts_concat.R
    
    403.4 kB
  - SimulatedData.csv
    
    562.3 kB
- README.docx
  
  18.0 kB

ReproducibleCode.zip