ReproducibleCode.zip
ReproducibleCode
AdvancedModel_WeightInteractsSex
Analysis_WeightInteractionTerm.R
6.9 kB
FETFramework.R
9.7 kB
LogisticFramework.R
24.0 kB
MMFramework.R
54.1 kB
MMFrameworkAssessSD.R
42.2 kB
PhenList.R
23.2 kB
PhenTestResult.R
2.7 kB
README.docx
20.1 kB
RRFramework.R
28.5 kB
SD-cont-sex-weight-report-1474904013678.tsv
187.3 MB
TFFramework.R
43.5 kB
classes.R
31.9 kB
classificationSD.R
8.2 kB
diagnostictest.R
4.9 kB
graphsDataset.R
21.3 kB
graphsResults.R
20.2 kB
summaryOutput.R
13.6 kB
testDataset.R
29.1 kB
transformation.R
8.8 kB
vectorOutput.R
23.3 kB
vectorOutputSD.R
22.2 kB
Calculating consistency of sex effect in control data across institutes
README.docx
15.0 kB
ReproducibilityWithinControlData.R
6.4 kB
Figure 8 and Supplementary Table 1
Figure_AtGeneLevel.R
17.3 kB
README.docx
16.6 kB
SDofGenotypeEffect_processedData_continuous.csv
119.3 MB
SDofGenotypeEffect_processedData_continuous.zip
33.2 MB
SummaryCallsAtGeneLevel.csv
305.3 kB
Usp47_BMC.csv
159.3 kB
Usp47_HDL.csv
410.3 kB
Usp47_fastedglucose.csv
394.6 kB
~$README.docx
162 Bytes
Figure 1
20160224-SD-in-controls.tsv
541.1 kB
AssessingRoleOfSex.R
9.1 kB
README.docx
16.5 kB
SexRoleInControlData.R
5.0 kB
roleSexWildtypeData.csv
519.2 kB
Figure 2
README.docx
16.6 kB
SD in wildtype data -without Weight.R
11.1 kB
SD-direct-1465833965753.tsv
341.4 kB
SexImpact-WithoutWeightAdjustment.R
9.1 kB
Figure 3
20160224-SD-in-controls.tsv
541.1 kB
Figure3.R
11.9 kB
README.docx
15.6 kB
Figure 4
20160229-SD-cont-report-1456575658973.tsv
188.1 MB
20160325-SD-cat-report-1458835534755.tsv
160.5 MB
Cat_GenotypeSDeffect.R
19.6 kB
FETFramework.R
9.7 kB
Figure2a.tiff
57.6 MB
LogisticFramework.R
24.0 kB
MMFramework.R
54.1 kB
MMFrameworkAssessSD.R
42.0 kB
PhenList.R
23.2 kB
PhenTestResult.R
2.7 kB
README.docx
22.1 kB
RRFramework.R
28.5 kB
SD-cont-sex-weight-report-1474920395749.tsv
187.7 MB
SD-cont-sex-weight-report-1474931846961.tsv
187.7 MB
SDofGenotypeEffect_processedData_categorical.csv
173.2 MB
SDofGenotypeEffect_processedData_continuous.csv
119.3 MB
SexRoleInModifyingGenotypeEffect.R
23.0 kB
SupplementaryTable2.csv
3.5 kB
SupplementaryTable3.csv
313 Bytes
TFFramework.R
43.5 kB
classes.R
31.9 kB
classificationSD.R
8.2 kB
diagnostictest.R
4.9 kB
graphsDataset.R
21.3 kB
graphsResults.R
20.2 kB
summaryOutput.R
13.6 kB
testDataset.R
29.1 kB
transformation.R
8.8 kB
vectorOutput.R
23.3 kB
vectorOutputSD.R
22.2 kB
Figure 5
20160229-SD-cont-report-1456575658973.tsv
188.1 MB
Call_behaviour_alternate_settings.R
10.2 kB
README.docx
13.0 kB
Figure 6
CC_MouseGP_B6N_WT.csv
591.7 kB
DEXA_MouseGP_B6N_WT.csv
309.8 kB
FACS_2panel_B6N_WT.csv
364.4 kB
FPR_SDv2_2Batch.R
8.1 kB
FPR_SDv2_2Batch_Wrapper.R
553 Bytes
FPR_SDv2_3Batch.R
8.5 kB
FPR_SDv2_3Batch_Wrapper.R
555 Bytes
FPR_SDv2_MultiGroup.R
8.6 kB
FPR_SDv2_MultiGroup_Wrapper.R
588 Bytes
FPR_SDv2_OneBatch.R
7.9 kB
FPR_SDv2_OneBatch_Wrapper.R
559 Bytes
FPR_SDv2_Random.R
7.1 kB
FPR_SDv2_Random_Wrapper.R
580 Bytes
FPR_under_null.R
10.5 kB
HAEM_MouseGP_B6N_WT.csv
394.4 kB
OF_MouseGP_B6JandN_WT.csv
707.2 kB
README.docx
17.8 kB
SD_directAssessmentRun1_outputExploration.R
23.0 kB
SDdirectAssessmentv1_2BatchOutput.csv
3.6 MB
SDdirectAssessmentv1_3BatchOutput.csv
3.9 MB
SDdirectAssessmentv1_MultiGroupOutputv2.csv
45.3 MB
SDdirectAssessmentv1_OBatchOutput.csv
2.8 MB
SDdirectAssessmentv1_RandomOutputv2.csv
45.2 MB
SDv2_PhenStat_scripts_concat.R
403.4 kB
Figure 7
CC_MouseGP_B6N_WT.csv
474.7 kB
ConstructionData.R
3.8 kB
FPR stage 2 in presence of genotype effect .R
4.9 kB
FPRResamplingWithGenotypeEffect.R
8.7 kB
FPRStage2WithMainEffectMultiBatchWorkflow.csv
25.9 MB
FPR_Stage2PresenceGenotypeEffect_MultiGroup_Wrapper.R
730 Bytes
README.docx
17.1 kB
SDv2_PhenStat_scripts_concat.R
403.4 kB
SimulatedData.csv
562.3 kB
README.docx
18.0 kB