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Processed read counts from macrophage RNA-seq and ATAC-seq experiments

Alasoo, Kaur; Gaffney, Daniel


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    <subfield code="a">&lt;p&gt;&lt;strong&gt;RNA-seq files:&lt;/strong&gt;&lt;/p&gt;

&lt;ol&gt;
	&lt;li&gt;RNA_count_matrix.txt.gz - raw read counts&lt;/li&gt;
	&lt;li&gt;RNA_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package&lt;/li&gt;
	&lt;li&gt;RNA_gene_metadata.txt.gz - information about the genes&lt;/li&gt;
	&lt;li&gt;RNA_sample_metadata.txt.gz - information about the samples&lt;/li&gt;
&lt;/ol&gt;

&lt;p&gt;&lt;strong&gt;ATAC-seq files:&lt;/strong&gt;&lt;/p&gt;

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	&lt;li&gt;ATAC_count_matrix.txt.gz - raw read counts&lt;/li&gt;
	&lt;li&gt;ATAC_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package&lt;/li&gt;
	&lt;li&gt;ATAC_peak_metadata.txt.gz - peak coordinates and other metadata&lt;/li&gt;
	&lt;li&gt;ATAC_sample_metadata.txt.gz - sample metadata&lt;/li&gt;
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