There is a newer version of this record available.

Dataset Open Access

Processed read counts from macrophage RNA-seq and ATAC-seq experiments

Alasoo, Kaur; Gaffney, Daniel


MARC21 XML Export

<?xml version='1.0' encoding='UTF-8'?>
<record xmlns="http://www.loc.gov/MARC21/slim">
  <leader>00000nmm##2200000uu#4500</leader>
  <controlfield tag="005">20200124192517.0</controlfield>
  <controlfield tag="001">259661</controlfield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Wellcome Trust Sanger Institute</subfield>
    <subfield code="a">Gaffney, Daniel</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">45029754</subfield>
    <subfield code="z">md5:1abd84d00542dd4f40f340e5499f4700</subfield>
    <subfield code="u">https://zenodo.org/record/259661/files/ATAC_count_matrix.txt.gz</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">114763266</subfield>
    <subfield code="z">md5:589f2ffc1a1586d70ab9522216f291c2</subfield>
    <subfield code="u">https://zenodo.org/record/259661/files/ATAC_cqn_matrix.txt.gz</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">5864161</subfield>
    <subfield code="z">md5:9183cf79f6ff266f901a3595a70432af</subfield>
    <subfield code="u">https://zenodo.org/record/259661/files/ATAC_peak_metadata.txt.gz</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">12002</subfield>
    <subfield code="z">md5:a57a4ee6eb679452381e2dc9455e9062</subfield>
    <subfield code="u">https://zenodo.org/record/259661/files/ATAC_sample_metadata.txt.gz</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">10911973</subfield>
    <subfield code="z">md5:ea78bce7df317921aa3c24ae22d971b7</subfield>
    <subfield code="u">https://zenodo.org/record/259661/files/RNA_count_matrix.txt.gz</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">28376630</subfield>
    <subfield code="z">md5:a302dd9912afeb4cf4fa69d5f990e8fd</subfield>
    <subfield code="u">https://zenodo.org/record/259661/files/RNA_cqn_matrix.txt.gz</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">2947865</subfield>
    <subfield code="z">md5:e625f24fcf331301385455f577a79c8e</subfield>
    <subfield code="u">https://zenodo.org/record/259661/files/RNA_gene_metadata.txt.gz</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">10423</subfield>
    <subfield code="z">md5:e575d50dea2a261c6f274df725eed1b3</subfield>
    <subfield code="u">https://zenodo.org/record/259661/files/RNA_sample_metadata.txt.gz</subfield>
  </datafield>
  <datafield tag="542" ind1=" " ind2=" ">
    <subfield code="l">open</subfield>
  </datafield>
  <datafield tag="260" ind1=" " ind2=" ">
    <subfield code="c">2017-01-25</subfield>
  </datafield>
  <datafield tag="909" ind1="C" ind2="O">
    <subfield code="p">openaire_data</subfield>
    <subfield code="p">user-macrophage-gene-expression-genetics</subfield>
    <subfield code="o">oai:zenodo.org:259661</subfield>
  </datafield>
  <datafield tag="100" ind1=" " ind2=" ">
    <subfield code="u">Wellcome Trust Sanger Institute</subfield>
    <subfield code="a">Alasoo, Kaur</subfield>
  </datafield>
  <datafield tag="245" ind1=" " ind2=" ">
    <subfield code="a">Processed read counts from macrophage RNA-seq and ATAC-seq experiments</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">user-macrophage-gene-expression-genetics</subfield>
  </datafield>
  <datafield tag="540" ind1=" " ind2=" ">
    <subfield code="u">https://creativecommons.org/licenses/by/4.0/legalcode</subfield>
    <subfield code="a">Creative Commons Attribution 4.0 International</subfield>
  </datafield>
  <datafield tag="650" ind1="1" ind2="7">
    <subfield code="a">cc-by</subfield>
    <subfield code="2">opendefinition.org</subfield>
  </datafield>
  <datafield tag="520" ind1=" " ind2=" ">
    <subfield code="a">&lt;p&gt;&lt;strong&gt;RNA-seq files:&lt;/strong&gt;&lt;/p&gt;

&lt;ol&gt;
	&lt;li&gt;RNA_count_matrix.txt.gz - raw read counts&lt;/li&gt;
	&lt;li&gt;RNA_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package&lt;/li&gt;
	&lt;li&gt;RNA_gene_metadata.txt.gz - information about the genes&lt;/li&gt;
	&lt;li&gt;RNA_sample_metadata.txt.gz - information about the samples&lt;/li&gt;
&lt;/ol&gt;

&lt;p&gt;&lt;strong&gt;ATAC-seq files:&lt;/strong&gt;&lt;/p&gt;

&lt;ol&gt;
	&lt;li&gt;ATAC_count_matrix.txt.gz - raw read counts&lt;/li&gt;
	&lt;li&gt;ATAC_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package&lt;/li&gt;
	&lt;li&gt;ATAC_peak_metadata.txt.gz - peak coordinates and other metadata&lt;/li&gt;
	&lt;li&gt;ATAC_sample_metadata.txt.gz - sample metadata&lt;/li&gt;
&lt;/ol&gt;</subfield>
  </datafield>
  <datafield tag="773" ind1=" " ind2=" ">
    <subfield code="n">doi</subfield>
    <subfield code="i">isVersionOf</subfield>
    <subfield code="a">10.5281/zenodo.748695</subfield>
  </datafield>
  <datafield tag="024" ind1=" " ind2=" ">
    <subfield code="a">10.5281/zenodo.259661</subfield>
    <subfield code="2">doi</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">dataset</subfield>
  </datafield>
</record>
2,059
1,370
views
downloads
All versions This version
Views 2,059565
Downloads 1,370263
Data volume 23.5 GB6.8 GB
Unique views 1,776502
Unique downloads 599106

Share

Cite as