January 25, 2017 Dataset Open Access

Alasoo, Kaur; Gaffney, Daniel

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  <identifier identifierType="DOI">10.5281/zenodo.259661</identifier>
  <creators>
    <creator>
      <creatorName>Alasoo, Kaur</creatorName>
      <givenName>Kaur</givenName>
      <familyName>Alasoo</familyName>
      <affiliation>Wellcome Trust Sanger Institute</affiliation>
    </creator>
    <creator>
      <creatorName>Gaffney, Daniel</creatorName>
      <givenName>Daniel</givenName>
      <familyName>Gaffney</familyName>
      <affiliation>Wellcome Trust Sanger Institute</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Processed read counts from macrophage RNA-seq and ATAC-seq experiments</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2017</publicationYear>
  <dates>
    <date dateType="Issued">2017-01-25</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/259661</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.748695</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/macrophage-gene-expression-genetics</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;&lt;strong&gt;RNA-seq files:&lt;/strong&gt;&lt;/p&gt;

&lt;ol&gt;
	&lt;li&gt;RNA_count_matrix.txt.gz - raw read counts&lt;/li&gt;
	&lt;li&gt;RNA_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package&lt;/li&gt;
	&lt;li&gt;RNA_gene_metadata.txt.gz - information about the genes&lt;/li&gt;
	&lt;li&gt;RNA_sample_metadata.txt.gz - information about the samples&lt;/li&gt;
&lt;/ol&gt;

&lt;p&gt;&lt;strong&gt;ATAC-seq files:&lt;/strong&gt;&lt;/p&gt;

&lt;ol&gt;
	&lt;li&gt;ATAC_count_matrix.txt.gz - raw read counts&lt;/li&gt;
	&lt;li&gt;ATAC_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package&lt;/li&gt;
	&lt;li&gt;ATAC_peak_metadata.txt.gz - peak coordinates and other metadata&lt;/li&gt;
	&lt;li&gt;ATAC_sample_metadata.txt.gz - sample metadata&lt;/li&gt;
&lt;/ol&gt;</description>
  </descriptions>
</resource>