There is a newer version of this record available.

Dataset Open Access

Processed read counts from macrophage RNA-seq and ATAC-seq experiments

Alasoo, Kaur; Gaffney, Daniel


DCAT Export

<?xml version='1.0' encoding='utf-8'?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:cnt="http://www.w3.org/2011/content#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/" xmlns:dctype="http://purl.org/dc/dcmitype/" xmlns:dcat="http://www.w3.org/ns/dcat#" xmlns:duv="http://www.w3.org/ns/duv#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:frapo="http://purl.org/cerif/frapo/" xmlns:geo="http://www.w3.org/2003/01/geo/wgs84_pos#" xmlns:gsp="http://www.opengis.net/ont/geosparql#" xmlns:locn="http://www.w3.org/ns/locn#" xmlns:org="http://www.w3.org/ns/org#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:schema="http://schema.org/" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:vcard="http://www.w3.org/2006/vcard/ns#" xmlns:wdrs="http://www.w3.org/2007/05/powder-s#">
  <rdf:Description rdf:about="https://doi.org/10.5281/zenodo.259661">
    <rdf:type rdf:resource="http://www.w3.org/ns/dcat#Dataset"/>
    <dct:type rdf:resource="http://purl.org/dc/dcmitype/Dataset"/>
    <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://doi.org/10.5281/zenodo.259661</dct:identifier>
    <foaf:page rdf:resource="https://doi.org/10.5281/zenodo.259661"/>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Alasoo, Kaur</foaf:name>
        <foaf:givenName>Kaur</foaf:givenName>
        <foaf:familyName>Alasoo</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Wellcome Trust Sanger Institute</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Gaffney, Daniel</foaf:name>
        <foaf:givenName>Daniel</foaf:givenName>
        <foaf:familyName>Gaffney</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Wellcome Trust Sanger Institute</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:title>Processed read counts from macrophage RNA-seq and ATAC-seq experiments</dct:title>
    <dct:publisher>
      <foaf:Agent>
        <foaf:name>Zenodo</foaf:name>
      </foaf:Agent>
    </dct:publisher>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2017</dct:issued>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2017-01-25</dct:issued>
    <owl:sameAs rdf:resource="https://zenodo.org/record/259661"/>
    <adms:identifier>
      <adms:Identifier>
        <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/259661</skos:notation>
      </adms:Identifier>
    </adms:identifier>
    <dct:isVersionOf rdf:resource="https://doi.org/10.5281/zenodo.748695"/>
    <dct:isPartOf rdf:resource="https://zenodo.org/communities/macrophage-gene-expression-genetics"/>
    <dct:description>&lt;p&gt;&lt;strong&gt;RNA-seq files:&lt;/strong&gt;&lt;/p&gt; &lt;ol&gt; &lt;li&gt;RNA_count_matrix.txt.gz - raw read counts&lt;/li&gt; &lt;li&gt;RNA_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package&lt;/li&gt; &lt;li&gt;RNA_gene_metadata.txt.gz - information about the genes&lt;/li&gt; &lt;li&gt;RNA_sample_metadata.txt.gz - information about the samples&lt;/li&gt; &lt;/ol&gt; &lt;p&gt;&lt;strong&gt;ATAC-seq files:&lt;/strong&gt;&lt;/p&gt; &lt;ol&gt; &lt;li&gt;ATAC_count_matrix.txt.gz - raw read counts&lt;/li&gt; &lt;li&gt;ATAC_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package&lt;/li&gt; &lt;li&gt;ATAC_peak_metadata.txt.gz - peak coordinates and other metadata&lt;/li&gt; &lt;li&gt;ATAC_sample_metadata.txt.gz - sample metadata&lt;/li&gt; &lt;/ol&gt;</dct:description>
    <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/>
    <dct:accessRights>
      <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess">
        <rdfs:label>Open Access</rdfs:label>
      </dct:RightsStatement>
    </dct:accessRights>
    <dcat:distribution>
      <dcat:Distribution>
        <dct:license rdf:resource="http://creativecommons.org/licenses/by/4.0/legalcode"/>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.259661"/>
      </dcat:Distribution>
    </dcat:distribution>
  </rdf:Description>
</rdf:RDF>
653
153
views
downloads
All versions This version
Views 653168
Downloads 15350
Data volume 2.4 GB1.0 GB
Unique views 598159
Unique downloads 6123

Share

Cite as