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PyTXMS singularity container

Hamed Khakzad; Lars Malmström


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  <identifier identifierType="DOI">10.5281/zenodo.2593626</identifier>
  <creators>
    <creator>
      <creatorName>Hamed Khakzad</creatorName>
      <affiliation>Institute for Computational Science, University of Zurich, Zurich, Switzerland</affiliation>
    </creator>
    <creator>
      <creatorName>Lars Malmström</creatorName>
      <affiliation>Institute for Computational Science, University of Zurich, Zurich, Switzerland</affiliation>
    </creator>
  </creators>
  <titles>
    <title>PyTXMS singularity container</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2019</publicationYear>
  <subjects>
    <subject>Cross-linking Mass Spectrometry; Protein-protein Interaction Networks</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2019-03-14</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/2593626</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="References">10.1038/s41467-018-07986-1</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.2593625</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/restrictedAccess">Restricted Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Singularity container to run PyTXMS package for targeted cross-linking mass spectrometry.&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;All required softwares are installed&lt;/li&gt;
	&lt;li&gt;It contains PyRosetta - So you need to have a valid Rosetta License before using the container.&lt;/li&gt;
	&lt;li&gt;Sample data and a short README file are provided here. For further information please&amp;nbsp;see PyTXMS documentation on Rosetta wiki.&lt;/li&gt;
&lt;/ul&gt;</description>
    <description descriptionType="Other">{"references": ["Hauri, S., Khakzad, H., Happonen, L., Teleman, J., Malmstr\u00f6m, J., &amp; Malmstr\u00f6m, L. (2019). Rapid determination of quaternary protein structures in complex biological samples. Nature communications, 10(1), 192. doi:10.1038/s41467-018-07986-1"]}</description>
  </descriptions>
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