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The changes in this version are small, but the impact changes the behavior, so the minor version number is bumped. This updates first_date to NOT override standard = TRUE. This changes behavior because first_date used to automatically set standard = FALSE.

\n

The change to having standard supersede first_date is more consistent with normal behavior and gives users more freedom in the end. Much thanks goes to @caijun for pointing this out and elaborating patiently.

\n

To alert users to the change while minimizing annoyance, a one-time warning is now issued if standard is not specified with first_date. This can be explicitly turned off by setting an the incidence.warn.first_date option to FALSE (as described in the warning):

\n
library("incidence")\nd <- Sys.Date() + sample(-3:10, 10, replace = TRUE)\nSys.Date() - 10\n#> [1] "2019-02-23"\n
\n

If both standard and first_datespecified, no warning

\n
incidence(d, interval = "week", first_date = Sys.Date() - 10, standard = TRUE)\n#> <incidence object>\n#> [10 cases from days 2019-02-18 to 2019-03-11]\n#> [10 cases from ISO weeks 2019-W08 to 2019-W11]\n#> \n#> $counts: matrix with 4 rows and 1 columns\n#> $n: 10 cases in total\n#> $dates: 4 dates marking the left-side of bins\n#> $interval: 1 week\n#> $timespan: 22 days\n#> $cumulative: FALSE\n
\n

warning issued if standard not specified

\n
incidence(d, interval = "week", first_date = Sys.Date() - 10)\n#> Warning in incidence.Date(d, interval = "week", first_date = Sys.Date() - : \n#> \n#> As of incidence version 1.6.0, the default behavior has been modified so that `first_date` no longer overrides `standard`. If you want to use Sys.Date() - 10 as the precise `first_date`, set `standard = FALSE`.\n#> \n#> To remove this warning in the future,  explicitly set the `standard` argument OR use `options(incidence.warn.first_date = FALSE)`\n#> <incidence object>\n#> [10 cases from days 2019-02-18 to 2019-03-11]\n#> [10 cases from ISO weeks 2019-W08 to 2019-W11]\n#> \n#> $counts: matrix with 4 rows and 1 columns\n#> $n: 10 cases in total\n#> $dates: 4 dates marking the left-side of bins\n#> $interval: 1 week\n#> $timespan: 22 days\n#> $cumulative: FALSE\n
\n

no warning issued the second time around.

\n
incidence(d, interval = "week", first_date = Sys.Date() - 10)\n#> <incidence object>\n#> [10 cases from days 2019-02-18 to 2019-03-11]\n#> [10 cases from ISO weeks 2019-W08 to 2019-W11]\n#> \n#> $counts: matrix with 4 rows and 1 columns\n#> $n: 10 cases in total\n#> $dates: 4 dates marking the left-side of bins\n#> $interval: 1 week\n#> $timespan: 22 days\n#> $cumulative: FALSE\n
\n

<sup>Created on 2019-03-05 by the [reprex package](https://reprex.tidyverse.org) (v0.2.1)</sup>

\n

Full changes detailed below:

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