Lesson Open Access

Training material for single-cell RNA-seq data analysis (Galaxy Training Network tutorial)

Tekman, Mehmet

The data provided here is part of the Galaxy Training Network tutorial that analyses single-cell RNA-seq data (scRNA) using cell barcodes and data from Freiburg MPI Grün Lab. This dataset (GEO Accession: GSM2668223) consists of paired-end data from the bone marrow of a 5-week old male C57 mouse, with a downsampled subset to facilitate ease-of-processing during live demonstration.

The Plate/Batch datasets were generated from scripts.

Files (1.2 GB)
Name Size
celseq_barcodes.192.tabular
md5:b7d517de7df1f26170e8322783657fc4
1.3 kB Download
Mus_musculus.GRCm38.93.mm10.UCSC.ncbiRefSeq.gtf
md5:f70b5a1f8985d1d150538987bbf6b1fc
264.7 MB Download
P1_B1.tabular
md5:8b57e74c0e17da35bc9fc7a16bdb3ed3
1.1 MB Download
P1_B2.tabular
md5:26a6cb201287104660ac3775b6544f8c
1.0 MB Download
P2_B3.tabular
md5:a46c5da6449d6ab687897e91fb568846
999.2 kB Download
P2_B4.tabular
md5:6cb933303c03684fd53ef88256e7c81c
1.1 MB Download
SRR5683689_1.fastq.gz
md5:09b7efb0fb38fa1fdcc9d397e06032ce
239.1 MB Download
SRR5683689_1.subset.fastq
md5:fc33c2818c07870f32749516eb68e8d7
12.9 MB Download
SRR5683689_2.fastq.gz
md5:aae3e3f24fcf2be55374320a6cdb9990
686.6 MB Download
SRR5683689_2.subset.fastq
md5:1ec52083d286c167b801d58482702a7c
24.1 MB Download
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