Dataset Open Access
Delphine Lariviere; Anton Nekrutenko
<?xml version='1.0' encoding='UTF-8'?> <record xmlns="http://www.loc.gov/MARC21/slim"> <leader>00000nmm##2200000uu#4500</leader> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">TnSeq</subfield> </datafield> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">Staphylococcus aureus</subfield> </datafield> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">Galaxy Training Material</subfield> </datafield> <controlfield tag="005">20200124192543.0</controlfield> <controlfield tag="001">2579335</controlfield> <datafield tag="700" ind1=" " ind2=" "> <subfield code="u">The Pennsylvania State University</subfield> <subfield code="a">Anton Nekrutenko</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">43</subfield> <subfield code="z">md5:40f3729797b22cf80f2f182bb342e943</subfield> <subfield code="u">https://zenodo.org/record/2579335/files/condition_barcodes.fasta</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">67</subfield> <subfield code="z">md5:83ff71076679d3ddf8dc6a3909b10cf6</subfield> <subfield code="u">https://zenodo.org/record/2579335/files/construct_barcodes.fasta</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">2861755</subfield> <subfield code="z">md5:53d5b9cb9f985d0b92e56dd57a739f39</subfield> <subfield code="u">https://zenodo.org/record/2579335/files/staph_aur.fasta</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">1948734</subfield> <subfield code="z">md5:a9a14a2b0d11c83801367701354fce6a</subfield> <subfield code="u">https://zenodo.org/record/2579335/files/staph_aur.gff3</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">217708163</subfield> <subfield code="z">md5:92ee21f7ed14002a61d115fb444cdf50</subfield> <subfield code="u">https://zenodo.org/record/2579335/files/Tnseq-Tutorial-reads.fastqsanger.gz</subfield> </datafield> <datafield tag="542" ind1=" " ind2=" "> <subfield code="l">open</subfield> </datafield> <datafield tag="260" ind1=" " ind2=" "> <subfield code="c">2019-02-27</subfield> </datafield> <datafield tag="909" ind1="C" ind2="O"> <subfield code="p">openaire_data</subfield> <subfield code="o">oai:zenodo.org:2579335</subfield> </datafield> <datafield tag="100" ind1=" " ind2=" "> <subfield code="u">The Pennsylvania State University</subfield> <subfield code="a">Delphine Lariviere</subfield> </datafield> <datafield tag="245" ind1=" " ind2=" "> <subfield code="a">Sample datasets for Transposon insertion sequencing analysis tutorial</subfield> </datafield> <datafield tag="540" ind1=" " ind2=" "> <subfield code="u">https://creativecommons.org/licenses/by/4.0/legalcode</subfield> <subfield code="a">Creative Commons Attribution 4.0 International</subfield> </datafield> <datafield tag="650" ind1="1" ind2="7"> <subfield code="a">cc-by</subfield> <subfield code="2">opendefinition.org</subfield> </datafield> <datafield tag="520" ind1=" " ind2=" "> <subfield code="a"><p>The dataset contains five files:</p> <ol> <li>Tnseq-Tutorial-reads.fastqsanger.gz&nbsp; - A subset of TnSeq reads published in&nbsp; `Santiago, M., Matano, L. M., Moussa, S. H., Gilmore, M. S., Walker, S., &amp; Meredith, T. C. (2015). A new platform for ultra-high density Staphylococcus aureus transposon libraries. <em>BMC Genomics</em>, <em>16</em>(1), 1&ndash;18. http://doi.org/10.1186/s12864-015-1361-3`</li> <li>condition_barcodes.fasta&nbsp;-&nbsp; Set of barcodes to separate reads from different experimental conditions</li> <li>construct_barcodes.fasta&nbsp; - Set of barcodes to separate reads from different transposon constructs</li> <li>staph_aur.fasta&nbsp;: Genome&nbsp;file for <em>Staphylococcus aureus&nbsp;</em></li> <li>staph_aur.fasta&nbsp;: Annotation file for <em>Staphylococcus aureus&nbsp;</em></li> </ol></subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">isVersionOf</subfield> <subfield code="a">10.5281/zenodo.2579334</subfield> </datafield> <datafield tag="024" ind1=" " ind2=" "> <subfield code="a">10.5281/zenodo.2579335</subfield> <subfield code="2">doi</subfield> </datafield> <datafield tag="980" ind1=" " ind2=" "> <subfield code="a">dataset</subfield> </datafield> </record>
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