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Sample datasets for Transposon insertion sequencing analysis tutorial

Delphine Lariviere; Anton Nekrutenko


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{
  "description": "<p>The dataset contains five files:</p>\n\n<ol>\n\t<li>Tnseq-Tutorial-reads.fastqsanger.gz&nbsp; - A subset of TnSeq reads published in&nbsp; `Santiago, M., Matano, L. M., Moussa, S. H., Gilmore, M. S., Walker, S., &amp; Meredith, T. C. (2015). A new platform for ultra-high density Staphylococcus aureus transposon libraries. <em>BMC Genomics</em>, <em>16</em>(1), 1&ndash;18. http://doi.org/10.1186/s12864-015-1361-3`</li>\n\t<li>condition_barcodes.fasta&nbsp;-&nbsp; Set of barcodes to separate reads from different experimental conditions</li>\n\t<li>construct_barcodes.fasta&nbsp; - Set of barcodes to separate reads from different transposon constructs</li>\n\t<li>staph_aur.fasta&nbsp;: Genome&nbsp;file for <em>Staphylococcus aureus&nbsp;</em></li>\n\t<li>staph_aur.fasta&nbsp;: Annotation file for <em>Staphylococcus aureus&nbsp;</em></li>\n</ol>", 
  "license": "https://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "The Pennsylvania State University", 
      "@type": "Person", 
      "name": "Delphine Lariviere"
    }, 
    {
      "affiliation": "The Pennsylvania State University", 
      "@type": "Person", 
      "name": "Anton Nekrutenko"
    }
  ], 
  "url": "https://zenodo.org/record/2579335", 
  "datePublished": "2019-02-27", 
  "keywords": [
    "TnSeq", 
    "Staphylococcus aureus", 
    "Galaxy Training Material"
  ], 
  "@context": "https://schema.org/", 
  "distribution": [
    {
      "contentUrl": "https://zenodo.org/api/files/969c6811-d3c0-4ba7-9320-2310a859d5eb/condition_barcodes.fasta", 
      "encodingFormat": "fasta", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/969c6811-d3c0-4ba7-9320-2310a859d5eb/construct_barcodes.fasta", 
      "encodingFormat": "fasta", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/969c6811-d3c0-4ba7-9320-2310a859d5eb/staph_aur.fasta", 
      "encodingFormat": "fasta", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/969c6811-d3c0-4ba7-9320-2310a859d5eb/staph_aur.gff3", 
      "encodingFormat": "gff3", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/969c6811-d3c0-4ba7-9320-2310a859d5eb/Tnseq-Tutorial-reads.fastqsanger.gz", 
      "encodingFormat": "gz", 
      "@type": "DataDownload"
    }
  ], 
  "identifier": "https://doi.org/10.5281/zenodo.2579335", 
  "@id": "https://doi.org/10.5281/zenodo.2579335", 
  "@type": "Dataset", 
  "name": "Sample datasets for Transposon insertion sequencing analysis tutorial"
}
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