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Sample datasets for Transposon insertion sequencing analysis tutorial

Delphine Lariviere; Anton Nekrutenko


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  <identifier identifierType="DOI">10.5281/zenodo.2579335</identifier>
  <creators>
    <creator>
      <creatorName>Delphine Lariviere</creatorName>
      <affiliation>The Pennsylvania State University</affiliation>
    </creator>
    <creator>
      <creatorName>Anton Nekrutenko</creatorName>
      <affiliation>The Pennsylvania State University</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Sample datasets for Transposon insertion sequencing analysis tutorial</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2019</publicationYear>
  <subjects>
    <subject>TnSeq</subject>
    <subject>Staphylococcus aureus</subject>
    <subject>Galaxy Training Material</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2019-02-27</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/2579335</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.2579334</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;The dataset contains five files:&lt;/p&gt;

&lt;ol&gt;
	&lt;li&gt;Tnseq-Tutorial-reads.fastqsanger.gz&amp;nbsp; - A subset of TnSeq reads published in&amp;nbsp; `Santiago, M., Matano, L. M., Moussa, S. H., Gilmore, M. S., Walker, S., &amp;amp; Meredith, T. C. (2015). A new platform for ultra-high density Staphylococcus aureus transposon libraries. &lt;em&gt;BMC Genomics&lt;/em&gt;, &lt;em&gt;16&lt;/em&gt;(1), 1&amp;ndash;18. http://doi.org/10.1186/s12864-015-1361-3`&lt;/li&gt;
	&lt;li&gt;condition_barcodes.fasta&amp;nbsp;-&amp;nbsp; Set of barcodes to separate reads from different experimental conditions&lt;/li&gt;
	&lt;li&gt;construct_barcodes.fasta&amp;nbsp; - Set of barcodes to separate reads from different transposon constructs&lt;/li&gt;
	&lt;li&gt;staph_aur.fasta&amp;nbsp;: Genome&amp;nbsp;file for &lt;em&gt;Staphylococcus aureus&amp;nbsp;&lt;/em&gt;&lt;/li&gt;
	&lt;li&gt;staph_aur.fasta&amp;nbsp;: Annotation file for &lt;em&gt;Staphylococcus aureus&amp;nbsp;&lt;/em&gt;&lt;/li&gt;
&lt;/ol&gt;</description>
  </descriptions>
</resource>
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