Dataset Open Access

Sample datasets for Transposon insertion sequencing analysis tutorial

Delphine Lariviere; Anton Nekrutenko

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    <dct:title>Sample datasets for Transposon insertion sequencing analysis tutorial</dct:title>
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    <dcat:keyword>TnSeq</dcat:keyword>
    <dcat:keyword>Staphylococcus aureus</dcat:keyword>
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    <dct:description>&lt;p&gt;The dataset contains five files:&lt;/p&gt; &lt;ol&gt; &lt;li&gt;Tnseq-Tutorial-reads.fastqsanger.gz&amp;nbsp; - A subset of TnSeq reads published in&amp;nbsp; `Santiago, M., Matano, L. M., Moussa, S. H., Gilmore, M. S., Walker, S., &amp;amp; Meredith, T. C. (2015). A new platform for ultra-high density Staphylococcus aureus transposon libraries. &lt;em&gt;BMC Genomics&lt;/em&gt;, &lt;em&gt;16&lt;/em&gt;(1), 1&amp;ndash;18. http://doi.org/10.1186/s12864-015-1361-3`&lt;/li&gt; &lt;li&gt;condition_barcodes.fasta&amp;nbsp;-&amp;nbsp; Set of barcodes to separate reads from different experimental conditions&lt;/li&gt; &lt;li&gt;construct_barcodes.fasta&amp;nbsp; - Set of barcodes to separate reads from different transposon constructs&lt;/li&gt; &lt;li&gt;staph_aur.fasta&amp;nbsp;: Genome&amp;nbsp;file for &lt;em&gt;Staphylococcus aureus&amp;nbsp;&lt;/em&gt;&lt;/li&gt; &lt;li&gt;staph_aur.fasta&amp;nbsp;: Annotation file for &lt;em&gt;Staphylococcus aureus&amp;nbsp;&lt;/em&gt;&lt;/li&gt; &lt;/ol&gt;</dct:description>
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Publication date:
February 27, 2019
DOI:
10.5281/zenodo.2579335

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Keyword(s):
TnSeq Staphylococcus aureus Galaxy Training Material
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