2579279
doi
10.5281/zenodo.2579279
oai:zenodo.org:2579279
Data for Galaxy CLIP-Seq Training Material
Florian Heyl
Institut of Computer Science, Albert-Ludwigs-Universität Freiburg, MeInBio - BioInMe Research Training Group
info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
CLIP-Seq
Human
RBFOX2
Splicing Factor
eCLIP
<p>The eCLIP data provided here is a subset of the eCLIP data of RBFOX2 from a study published by Nostrand et al. (2016, http://dx.doi.org/10.1038/nmeth.3810). The dataset contains the first biological replicate of RBFOX2 CLIP-seq and the input control experiment (*fastq files). The data was changed and downsampled to reduce data processing time, thus the datasets does not correspond to the original data pulled from Nostrand et al. (2016, http://dx.doi.org/10.1038/nmeth.3810). Also included is a text file (.txt) encompassing the chromosome sizes of hg19 and hg38 obtained from UCSC (http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.chrom.sizes, http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/hg38.chrom.sizes) and a genome annotation for hg19 (.gtf) taken from Ensembl (http://ftp.ensemblorg.ebi.ac.uk/pub/release-74/gtf/homo_sapiens/) and for hg38 taken from the Galaxy libraries (https://usegalaxy.eu/library/list#folders/F30cab321d898d2fb/datasets/9ba790aa79c9cf23). The data is used for a galaxy training course about CLIP-Seq data analysis. </p>
Zenodo
2018-08-03
info:eu-repo/semantics/other
1327370
1579893982.694789
522590834
md5:cfee5b3973b7bd5f63af5e8ed8c960c6
https://zenodo.org/records/2579279/files/Homo_sapiens.GRCh37.74.gtf
78508622
md5:6f3bb4b3a6c3b395d54187676cfe454a
https://zenodo.org/records/2579279/files/RBFOX2-204-INPUT_S2_R2.fastq
78463988
md5:e9b4afae2368d6bc84480ec0903ca929
https://zenodo.org/records/2579279/files/RBFOX2-204-INPUT_S2_R1.fastq
78459412
md5:9eb675aab90fcd880f242c0429d297ab
https://zenodo.org/records/2579279/files/RBFOX2-204-CLIP_S1_R2_RBFOX2.fastq
71685760
md5:64f7581e25dec4accad3bce6a68b5361
https://zenodo.org/records/2579279/files/RBFOX2-204-CLIP_S1_R1_RBFOX2.fastq
1416417029
md5:4d4ad1ab5546e541204b5c03063bcc11
https://zenodo.org/records/2579279/files/Homo_sapiens.GRCh38.87.gtf
1971
md5:b3b0fcf79b5477ab0b3af02e81eac8dc
https://zenodo.org/records/2579279/files/hg19_chr_sizes.txt
11672
md5:a088bac41bcc2495291a973611da83cb
https://zenodo.org/records/2579279/files/hg38_chr_sizes.txt
public
10.5281/zenodo.1327370
isVersionOf
doi