Conference paper Open Access
Norman, Christopher;
Leeflang, Mariska;
Névéol, Aurélie
<?xml version='1.0' encoding='utf-8'?> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/" xmlns:dctype="http://purl.org/dc/dcmitype/" xmlns:dcat="http://www.w3.org/ns/dcat#" xmlns:duv="http://www.w3.org/ns/duv#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:frapo="http://purl.org/cerif/frapo/" xmlns:geo="http://www.w3.org/2003/01/geo/wgs84_pos#" xmlns:gsp="http://www.opengis.net/ont/geosparql#" xmlns:locn="http://www.w3.org/ns/locn#" xmlns:org="http://www.w3.org/ns/org#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:schema="http://schema.org/" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:vcard="http://www.w3.org/2006/vcard/ns#" xmlns:wdrs="http://www.w3.org/2007/05/powder-s#"> <rdf:Description rdf:about="https://doi.org/10.5281/zenodo.2574710"> <rdf:type rdf:resource="http://www.w3.org/ns/dcat#Dataset"/> <dct:type rdf:resource="http://purl.org/dc/dcmitype/Text"/> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://doi.org/10.5281/zenodo.2574710</dct:identifier> <foaf:page rdf:resource="https://doi.org/10.5281/zenodo.2574710"/> <dct:creator> <rdf:Description rdf:about="http://orcid.org/0000-0001-9306-2363"> <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0001-9306-2363</dct:identifier> <foaf:name>Norman, Christopher</foaf:name> <foaf:givenName>Christopher</foaf:givenName> <foaf:familyName>Norman</foaf:familyName> <org:memberOf> <foaf:Organization> <foaf:name>LIMSI, CNRS</foaf:name> </foaf:Organization> </org:memberOf> </rdf:Description> </dct:creator> <dct:creator> <rdf:Description> <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/> <foaf:name>Leeflang, Mariska</foaf:name> <foaf:givenName>Mariska</foaf:givenName> <foaf:familyName>Leeflang</foaf:familyName> <org:memberOf> <foaf:Organization> <foaf:name>AMC, University of Amsterdam</foaf:name> </foaf:Organization> </org:memberOf> </rdf:Description> </dct:creator> <dct:creator> <rdf:Description> <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/> <foaf:name>Névéol, Aurélie</foaf:name> <foaf:givenName>Aurélie</foaf:givenName> <foaf:familyName>Névéol</foaf:familyName> <org:memberOf> <foaf:Organization> <foaf:name>LIMSI, CNRS</foaf:name> </foaf:Organization> </org:memberOf> </rdf:Description> </dct:creator> <dct:title>Data Extraction and Synthesis in Systematic Reviews of Diagnostic Test Accuracy: A Corpus for Automating and Evaluating the Process</dct:title> <dct:publisher> <foaf:Agent> <foaf:name>Zenodo</foaf:name> </foaf:Agent> </dct:publisher> <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2018</dct:issued> <frapo:isFundedBy rdf:resource="info:eu-repo/grantAgreement/EC/H2020/676207/"/> <schema:funder> <foaf:Organization> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10.13039/501100000780</dct:identifier> <foaf:name>European Commission</foaf:name> </foaf:Organization> </schema:funder> <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2018-11-05</dct:issued> <owl:sameAs rdf:resource="https://zenodo.org/record/2574710"/> <adms:identifier> <adms:Identifier> <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/2574710</skos:notation> <adms:schemeAgency>url</adms:schemeAgency> </adms:Identifier> </adms:identifier> <dct:isVersionOf rdf:resource="https://doi.org/10.5281/zenodo.2574709"/> <dct:isPartOf rdf:resource="https://zenodo.org/communities/miror"/> <dct:description><p>Background: Systematic reviews are critical for obtaining accurate estimates of diagnostic test accuracy, yet these require extracting information buried in free text articles, which is often laborious. Objective: We create a dataset describing the data extraction and synthesis processes in 63 DTA systematic reviews, and demonstrate its utility by using it to replicate the data synthesis in the original reviews. Method: We construct our dataset using a custom automated extraction pipeline complemented with manual extraction, verification, and post-editing. We evaluate using manual assessment by two annotators and by comparing against data extracted from source files. Results: The constructed dataset contains 5,848 test results for 1,354 diagnostic tests from 1,738 diagnostic studies. We observe an extraction error rate of 0.06&ndash;0.3%. Conclusions: This constitutes the first dataset describing the later stages of the DTA systematic review process, and is intended to be useful for automating or evaluating the process.</p></dct:description> <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/> <dct:accessRights> <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess"> <rdfs:label>Open Access</rdfs:label> </dct:RightsStatement> </dct:accessRights> <dcat:distribution> <dcat:Distribution> <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.2574710"/> </dcat:Distribution> </dcat:distribution> <dcat:distribution> <dcat:Distribution> <dcat:accessURL>https://doi.org/10.5281/zenodo.2574710</dcat:accessURL> <dcat:byteSize>101912</dcat:byteSize> <dcat:downloadURL>https://zenodo.org/record/2574710/files/normanAMIA2018_revised.pdf</dcat:downloadURL> <dcat:mediaType>application/pdf</dcat:mediaType> </dcat:Distribution> </dcat:distribution> </rdf:Description> <foaf:Project rdf:about="info:eu-repo/grantAgreement/EC/H2020/676207/"> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">676207</dct:identifier> <dct:title>Methods in Research on Research</dct:title> <frapo:isAwardedBy> <foaf:Organization> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10.13039/501100000780</dct:identifier> <foaf:name>European Commission</foaf:name> </foaf:Organization> </frapo:isAwardedBy> </foaf:Project> </rdf:RDF>
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